PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0202s0040.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family C2H2
Protein Properties Length: 252aa    MW: 27576.8 Da    PI: 6.7167
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0202s0040.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.20.00027100122123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          ++C++C + F ++  L  H++ H
  Kalax.0202s0040.1.p 100 FSCNYCRRKFYSSQALGGHQNAH 122
                          89*****************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.19E-698128No hitNo description
PROSITE profilePS5015711.385100127IPR007087Zinc finger, C2H2
PROSITE patternPS000280102122IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MDLNMMAVPS NSDSEDESEI NNLVGSSNPA IPDSYFKCHD SIRDSSCLPN LRNSSHLNHE  60
AVSLNLTLHS NASKPIDDGS DPGTELATQP PQVPRIQRLF SCNYCRRKFY SSQALGGHQN  120
AHKRERTMAK RAMKMGVFSH RYASLLSLPI HSHHAFGAMG LEAHALTHQS LGPPPPPCLY  180
ENNIHGFEHG GVPFFPEEDV GELPWPGSFR PHDDSNNLLS LTEKSPPTHF AAMAAPVRSS  240
SSPIPDLTLR L*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028078390.12e-52zinc finger protein 4-like
RefseqXP_028078391.12e-52zinc finger protein 4-like
RefseqXP_028078392.12e-52zinc finger protein 4-like
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66140.11e-32zinc finger protein 4