PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0202s0030.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family NF-YC
Protein Properties Length: 209aa    MW: 23761.9 Da    PI: 7.501
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0202s0030.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC99.82.1e-31531449100
                NF-YC   9 qiekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 
                          + ek+ dfknh++Pl rikki+ a edv+ i+a+a + +++a e+f++eltl +w++aeenkrrtl+k+diaaav+ t    flv+i+p+
  Kalax.0202s0030.1.p  53 NNEKVIDFKNHNFPLPRIKKIMIAVEDVRTICAKALMAFARAYEIFMMELTLLTWNQAEENKRRTLQKNDIAAAVNITIFMIFLVNIMPK 142
                          46999************************************************************************************9 PP

                NF-YC  99 de 100
                          ++
  Kalax.0202s0030.1.p 143 ED 144
                          86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471139.05E-1945130IPR009072Histone-fold
PfamPF001256.9E-1450129IPR007125Histone H2A/H2B/H3
Gene3DG3DSA:1.10.20.107.7E-2559127IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MGDREGLNGE ARGLELVQRM CELETLSVIL VGNSQSNPCY FYLIINSSLN KINNEKVIDF  60
KNHNFPLPRI KKIMIAVEDV RTICAKALMA FARAYEIFMM ELTLLTWNQA EENKRRTLQK  120
NDIAAAVNIT IFMIFLVNIM PKEDPMDEAV ASITRGQLPA GDPDILPYHY MSAQNMPLLG  180
TPEMIMRKPM MDPSLYTKRP HPYKAQHV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_B1e-3255142895NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1114120RRTLQKN
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters (By similarity). Interacts with REF6 to directly regulate SOC1 transcription in response to flowering signals from photoperiod and gibberellic acid pathways (PubMed:25105952). {ECO:0000250, ECO:0000269|PubMed:25105952}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028098953.11e-59nuclear transcription factor Y subunit C-9-like isoform X1
RefseqXP_028098954.11e-59nuclear transcription factor Y subunit C-9-like isoform X1
RefseqXP_028098955.17e-60nuclear transcription factor Y subunit C-9-like isoform X2
RefseqXP_028098956.17e-60nuclear transcription factor Y subunit C-9-like isoform X2
RefseqXP_028098957.17e-60nuclear transcription factor Y subunit C-9-like isoform X2
SwissprotQ8L4B28e-44NFYC9_ARATH; Nuclear transcription factor Y subunit C-9
TrEMBLA0A438KCF65e-58A0A438KCF6_VITVI; Nuclear transcription factor Y subunit C-9
TrEMBLF6HYY45e-58F6HYY4_VITVI; Uncharacterized protein
STRINGVIT_14s0128g00250.t018e-59(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08970.45e-46nuclear factor Y, subunit C9
Publications ? help Back to Top
  1. Hwang YH, et al.
    Functional conservation of rice OsNF-YB/YC and Arabidopsis AtNF-YB/YC proteins in the regulation of flowering time.
    Plant Cell Rep., 2016. 35(4): p. 857-65
    [PMID:26754793]
  2. Liu X, et al.
    The NF-YC-RGL2 module integrates GA and ABA signalling to regulate seed germination in Arabidopsis.
    Nat Commun, 2016. 7: p. 12768
    [PMID:27624486]
  3. Myers ZA, et al.
    NUCLEAR FACTOR Y, Subunit C (NF-YC) Transcription Factors Are Positive Regulators of Photomorphogenesis in Arabidopsis thaliana.
    PLoS Genet., 2016. 12(9): p. e1006333
    [PMID:27685091]
  4. Tang Y, et al.
    Arabidopsis NF-YCs Mediate the Light-Controlled Hypocotyl Elongation via Modulating Histone Acetylation.
    Mol Plant, 2017. 10(2): p. 260-273
    [PMID:27876642]
  5. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]
  6. Gnesutta N, et al.
    CONSTANS Imparts DNA Sequence Specificity to the Histone Fold NF-YB/NF-YC Dimer.
    Plant Cell, 2017. 29(6): p. 1516-1532
    [PMID:28526714]
  7. Bi C,Ma Y,Wang XF,Zhang DP
    Overexpression of the transcription factor NF-YC9 confers abscisic acid hypersensitivity in Arabidopsis.
    Plant Mol. Biol., 2017. 95(4-5): p. 425-439
    [PMID:28924726]
  8. Liu X, et al.
    Temporal-Specific Interaction of NF-YC and CURLY LEAF during the Floral Transition Regulates Flowering.
    Plant Physiol., 2018. 177(1): p. 105-114
    [PMID:29599268]