PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0202s0006.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | CO-like | ||||||||
Protein Properties | Length: 390aa MW: 42358.8 Da PI: 5.8561 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 25.5 | 2.8e-08 | 28 | 59 | 4 | 35 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHk 35 + C+++++ + lfC+ ++ +lC C + +H Kalax.0202s0006.1.p 28 KPCDLCKSASALLFCKPDSAFLCVACDTRIHA 59 67****************************93 PP | |||||||
2 | zf-B_box | 26.7 | 1.2e-08 | 69 | 115 | 2 | 42 |
zf-B_box 2 eerkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 + ++C+ +e+ +++ C+ + lC +C +H+ H++vpl Kalax.0202s0006.1.p 69 RLWICEVCEQVPASVTCKADAAALCVSCDADIHSAnplsrkHERVPL 115 5789*****************************66999999999986 PP | |||||||
3 | CCT | 71.2 | 2.6e-24 | 318 | 361 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea++lRY+eKrk+RkFeK+irY+sRKa+Ae+RpR+KGrFvk++ Kalax.0202s0006.1.p 318 REARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFVKRT 361 9*****************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00336 | 4.0E-12 | 25 | 72 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 9.812 | 25 | 72 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 1.2E-6 | 28 | 69 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 3.47E-8 | 29 | 72 | No hit | No description |
PROSITE profile | PS50119 | 10.665 | 68 | 115 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 1.5E-6 | 70 | 115 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.33E-9 | 71 | 115 | No hit | No description |
SMART | SM00336 | 2.3E-9 | 73 | 115 | IPR000315 | B-box-type zinc finger |
Pfam | PF06203 | 2.6E-18 | 318 | 360 | IPR010402 | CCT domain |
PROSITE profile | PS51017 | 16.797 | 318 | 360 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 390 aa Download sequence Send to blast |
MGIVVEENCV KGYPVVGGGL GVWPMAAKPC DLCKSASALL FCKPDSAFLC VACDTRIHAV 60 NKLASRHERL WICEVCEQVP ASVTCKADAA ALCVSCDADI HSANPLSRKH ERVPLVPFFE 120 SAESIIKKSS AANAAAASGN GSSNLVNFLV PGADEEEDQE DDVSWFIPPQ KAALTAAMDP 180 IEVKGAGVEL FYTDFDHLLD FENPNQLYLN FKNNQHVAGS DSVVPVQIKP EIVSGIGSSD 240 RCFDIDFCKS KLPFYNFDQS INHSVSSSSM DIALVPDGAS ASDISYSLGK HVNSGGGEAL 300 NINNSSATQA TQLTGLDREA RVLRYREKRK NRKFEKTIRY ASRKAYAETR PRIKGRFVKR 360 TDPDQELDRM MFSGGSIDFF EGYGVVPSH* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024928544.1 | 1e-134 | zinc finger protein CONSTANS-LIKE 5 | ||||
Refseq | XP_024928545.1 | 1e-134 | zinc finger protein CONSTANS-LIKE 5 | ||||
Swissprot | Q9FHH8 | 1e-102 | COL5_ARATH; Zinc finger protein CONSTANS-LIKE 5 | ||||
TrEMBL | A0A0L9TF49 | 1e-122 | A0A0L9TF49_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A0S3R7U8 | 1e-122 | A0A0S3R7U8_PHAAN; Uncharacterized protein | ||||
STRING | XP_002533687.1 | 1e-122 | (Ricinus communis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57660.1 | 5e-98 | CONSTANS-like 5 |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0202s0006.1.p |
Publications ? help Back to Top | |||
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