PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0201s0021.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | ERF | ||||||||
Protein Properties | Length: 240aa MW: 26735.2 Da PI: 4.8892 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 50.1 | 6.6e-16 | 48 | 97 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ykGVr + +g+WvAeIr p++ r r++lg++++ +Aa+a +aa +l+g Kalax.0201s0021.1.p 48 LYKGVRKRN-WGKWVAEIRLPNS---RDRIWLGSYDSQVKAARAFDAAIYCLRG 97 59****887.**********933...5**********99*************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 2.06E-26 | 47 | 107 | No hit | No description |
SuperFamily | SSF54171 | 4.64E-19 | 48 | 107 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 20.771 | 48 | 105 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.0E-27 | 48 | 107 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.5E-29 | 48 | 111 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.9E-8 | 49 | 60 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.1E-9 | 49 | 97 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.9E-8 | 71 | 87 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 240 aa Download sequence Send to blast |
MSLTILINVL IRILQLSIDN AAAAATSFES YCMAGGGGGG DSDSSSKLYK GVRKRNWGKW 60 VAEIRLPNSR DRIWLGSYDS QVKAARAFDA AIYCLRGSGA KFNFPHSPPD FRITRPLTNT 120 EIQEIAASYA NQEPRRSSGV EDVQQSTSSH FEELNFDHND SSNSSSSMWG GNEGQIDWPL 180 WNCLLDNVTD YRYPSPEYNS FLPYQSDQYN SFGHSGYESG SDEGYSQHNN LSLWNFQGY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 2e-14 | 38 | 107 | 4 | 74 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002324785.1 | 8e-46 | ethylene-responsive transcription factor ERF017 | ||||
TrEMBL | B9IKF6 | 2e-44 | B9IKF6_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0018s08320.1 | 3e-45 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G19210.1 | 2e-39 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0201s0021.1.p |