PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0200s0022.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | LSD | ||||||||
Protein Properties | Length: 160aa MW: 16285 Da PI: 7.9166 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 42.4 | 1.1e-13 | 42 | 66 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+gCr+lL YP+GA+sV+Ca+C++V Kalax.0200s0022.2.p 42 CSGCRNLLLYPAGATSVCCAVCNAV 66 ************************9 PP | |||||||
2 | zf-LSD1 | 43.6 | 4.7e-14 | 81 | 105 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggC+tlL+Y rGA sV+C++C+tV Kalax.0200s0022.2.p 81 CGGCHTLLMYIRGAMSVQCSCCHTV 105 ************************9 PP | |||||||
3 | zf-LSD1 | 41.7 | 2e-13 | 119 | 143 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+Cr lL+Y +GA+sV+Ca+C++V Kalax.0200s0022.2.p 119 CGNCRMLLMYQYGARSVKCAVCNFV 143 ***********************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.90.10.10 | 7.3E-4 | 35 | 140 | No hit | No description |
TIGRFAMs | TIGR01053 | 5.1E-13 | 39 | 69 | IPR005735 | Zinc finger, LSD1-type |
SuperFamily | SSF48695 | 4.6E-5 | 42 | 140 | IPR011031 | Multihaem cytochrome |
Pfam | PF06943 | 7.0E-11 | 42 | 66 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 5.6E-14 | 78 | 107 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 7.1E-12 | 81 | 105 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 4.6E-12 | 116 | 146 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 1.2E-12 | 119 | 143 | IPR005735 | Zinc finger, LSD1-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009814 | Biological Process | defense response, incompatible interaction | ||||
GO:0034051 | Biological Process | negative regulation of plant-type hypersensitive response | ||||
GO:0034052 | Biological Process | positive regulation of plant-type hypersensitive response | ||||
GO:0045595 | Biological Process | regulation of cell differentiation | ||||
GO:2000121 | Biological Process | regulation of removal of superoxide radicals |
Sequence ? help Back to Top |
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Protein Sequence Length: 160 aa Download sequence Send to blast |
MPVPLAPYPS PPVSYTTPAP APQPLPTAAA AAANGSQGQL VCSGCRNLLL YPAGATSVCC 60 AVCNAVTAVP PPGTEMAQLI CGGCHTLLMY IRGAMSVQCS CCHTVNLALE ANQVAHVNCG 120 NCRMLLMYQY GARSVKCAVC NFVTSVGAST SAAEQKFNS* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Positive regulator of reactive oxygen-induced cell death. May be involved in the repression of the copper/zinc superoxide dismutase CSD1 and CSD2 that detoxify accumulating superoxide before the reactive oxygen species (ROS) can trigger a cell death cascade. LSD1 and LOL1 have antagonistic effects on CSD1 and CSD2 accumulation to regulate oxidative stress-induced cell death. {ECO:0000269|PubMed:12732715}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012075917.1 | 3e-91 | protein LOL1 | ||||
Refseq | XP_012075918.1 | 3e-91 | protein LOL1 | ||||
Refseq | XP_012075919.1 | 3e-91 | protein LOL1 | ||||
Swissprot | Q93ZB1 | 6e-78 | LOL1_ARATH; Protein LOL1 | ||||
TrEMBL | A0A067KEI2 | 6e-90 | A0A067KEI2_JATCU; Uncharacterized protein | ||||
STRING | cassava4.1_018557m | 4e-88 | (Manihot esculenta) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G32540.3 | 1e-65 | lsd one like 1 |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0200s0022.2.p |
Publications ? help Back to Top | |||
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