PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0200s0003.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family bHLH
Protein Properties Length: 374aa    MW: 41515.6 Da    PI: 6.8251
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0200s0003.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.33.2e-14159210155
                          CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          +r++h  +Er+RR+++N+ ++ Lr+l+P++   ++++ + a+i+  A+e++k+L+
  Kalax.0200s0003.1.p 159 QRMTHIVVERNRRKQMNEHLSVLRSLMPQS---YAQRGDQASIVGGAIEFVKELE 210
                          79****************************...*******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.84E-13157214No hitNo description
SuperFamilySSF474595.1E-17158234IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.516158209IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.4E-15159226IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.3E-11159210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.6E-9164215IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    Send to blast
MCKPFAIYIR SDCMVVDCIP FVLHQRGRER ERERERGDQD LMAMEALHSN DFLNFLIYDT  60
LSATPVCANS SFVHHVAASS SSSDTANTLA YLDHQMNNNE PPQENNNDVA THAPGCGGSS  120
SGGNKKSNLG VQQEGGGNNK KRRRKRARVC KNKEEAETQR MTHIVVERNR RKQMNEHLSV  180
LRSLMPQSYA QRGDQASIVG GAIEFVKELE HIVQSLESQK CQIQSDSSHQ QVLSDATGTP  240
STPFSQFFTY PQYTWFQSPN KYSASSKASV ADIEVTLIET HANIRILTKR SPRQPYKLIA  300
SFHAVHLTIL HLNITTMDSL VLYSVSAKVE EGCPLITVDD IAGAVHHMLR IIEREEEQEE  360
DATAVAAAAA LCS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12535RGRERERERER
2138145NKKRRRKR
3139144KKRRRK
4139145KKRRRKR
5159170RMTHIVVERNRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023923169.11e-121transcription factor bHLH71-like
SwissprotQ9C7T44e-71BH096_ARATH; Transcription factor bHLH96
TrEMBLA0A2N9GA131e-117A0A2N9GA13_FAGSY; Uncharacterized protein
STRINGcassava4.1_012613m1e-112(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.18e-70bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]