PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0199s0024.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family NAC
Protein Properties Length: 393aa    MW: 44343.1 Da    PI: 7.3255
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0199s0024.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM170.84.2e-53201471128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 
                          l+pGfrFhPtdeelv +yL++kv gk++++ ++i+e+diyk+ePwdLp  +k+++++ ewyf+s  dkky +g r nrat++gyWkatg+
  Kalax.0199s0024.1.p  20 LAPGFRFHPTDEELVRYYLTRKVCGKNVRI-DAISEADIYKMEPWDLPglSKMRSRDLEWYFYSALDKKYGNGARMNRATSKGYWKATGN 108
                          579***************************.99***************6448888888******************************** PP

                  NAM  89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                          d++v++ ++++vg+kktLvf+kgrap g++t+Wvmheyrl
  Kalax.0199s0024.1.p 109 DRSVKH-ESRTVGMKKTLVFHKGRAPGGKRTNWVMHEYRL 147
                          ******.999****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.88E-6116170IPR003441NAC domain
PROSITE profilePS5100557.08220170IPR003441NAC domain
PfamPF023654.5E-2722147IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0005730Cellular Componentnucleolus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 393 aa     Download sequence    Send to blast
MAIICHENKA VTSPPPPPAL APGFRFHPTD EELVRYYLTR KVCGKNVRID AISEADIYKM  60
EPWDLPGLSK MRSRDLEWYF YSALDKKYGN GARMNRATSK GYWKATGNDR SVKHESRTVG  120
MKKTLVFHKG RAPGGKRTNW VMHEYRLVDE ELERLGIVKD GFVLCRVFQK SGLGPPNGDQ  180
YAPFDESEWD DDQLVLVPGA ETGDEGLFSD EAEPRNSSSL EVNGQDKKHQ ETQPEKTENN  240
LRERDFLGSA LVCKNEKVDS WSQPSIVRAK RPRHFVTDPS RTKSSSSLPL GPSLSITSAS  300
TMTDAAAVAA RTLLQFPRES PQPSRFDIAS FDIPVHPSYL DLISNLQKEI HMVSADRDKF  360
RIEMMHAQAM IDVLQSRINF LLQENEDLKK SV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-4861703165NO APICAL MERISTEM PROTEIN
1ut4_B2e-4861703165NO APICAL MERISTEM PROTEIN
1ut7_A2e-4861703165NO APICAL MERISTEM PROTEIN
1ut7_B2e-4861703165NO APICAL MERISTEM PROTEIN
4dul_A2e-4861703165NAC domain-containing protein 19
4dul_B2e-4861703165NAC domain-containing protein 19
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00612ChIP-seqTransfer from AT3G10490Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019234549.11e-135PREDICTED: NAC domain-containing protein 78-like
TrEMBLA0A1J6KYG71e-134A0A1J6KYG7_NICAT; Nac domain-containing protein 78
STRINGXP_009619467.11e-135(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10490.15e-90NAC domain containing protein 52