PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0198s0035.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | GRAS | ||||||||
Protein Properties | Length: 468aa MW: 52632.9 Da PI: 6.9307 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 373.4 | 2.9e-114 | 74 | 466 | 2 | 373 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn.....sseelaal..... 81 +lL++cAe s++d+++a++lLa l e++spdgd+++Rl+++f++A++ l+ + +++ + +pp s + + + Kalax.0198s0035.1.p 74 LQLLIKCAELTSQSDFSAAHRLLALLLERSSPDGDSNERLVHHFAKAISYALNYTNPTMNNFIPPFMHSYPSsaispV------Vtanns 157 689***************************************************999999999877666433243221......123467 PP GRAS 82 .................klfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp........egppslRiTg 146 ++++++P+++f hltaNqaIleav+ge+ +Hi+Dfdi+qG+QWp ++qaL++R ++pp+lRiTg Kalax.0198s0035.1.p 158 ltldhppsdalihhstyLTLNKITPFIRFIHLTANQAILEAVDGETNIHILDFDIMQGFQWPLFMQALSERYsssaspnhHPPPMLRITG 247 7888999999888876555****************************************************9665555555599****** PP GRAS 147 vgspesgskeeleetgerLakfAeelgvpfefnvlvakrledle..leeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvksl 234 g+ + + l +tgerL kfA++l+++f+f++l+ ++++dl+ l L + p+++la+n+vl lh++ + +l + +L+++ksl Kalax.0198s0035.1.p 248 TGH----DLDVLMRTGERLLKFAQSLNLRFQFHPLLLHHTADLSslLAPL-LLPDDTLAINFVLYLHKFT--DETLYK----LLSTIKSL 326 ***....****************************777666662113333.678***************9..444555....******** PP GRAS 235 sPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGF 324 +P++v+++e+ea+h ++ Fl+rf+eal++ysa+f+slea+lp+ s+er vE+ ++grei ++v ++g +rre h+++e+W+ l+++GF Kalax.0198s0035.1.p 327 NPRIVTFSEREANHKTPVFLHRFVEALDHYSAIFNSLEANLPPSSQERLAVEQLWFGREILDIVGMQGGNRREMHRRFESWEVILRSSGF 416 ****************************************************************************************** PP GRAS 325 kpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaW 373 ++vpls++a +qaklllr ++ s+gy++++ s++++l Wk+r L+s+S+W Kalax.0198s0035.1.p 417 SKVPLSSFAFSQAKLLLRLHYpSEGYKIQNLSDCFFLSWKNRLLFSISSW 466 ************************************************** PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101447 | 5.49E-5 | 32 | 41 | No hit | No description |
PROSITE profile | PS50985 | 57.727 | 47 | 446 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 9.9E-112 | 74 | 466 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 468 aa Download sequence Send to blast |
MGSVSSEDQD AHPSSSSSSD LAHHHFLQLT LPPPPPPPPP PLSLSSALSL TSSSTPSFQY 60 QNFNSLPATT PQMLQLLIKC AELTSQSDFS AAHRLLALLL ERSSPDGDSN ERLVHHFAKA 120 ISYALNYTNP TMNNFIPPFM HSYPSSAISP VVTANNSLTL DHPPSDALIH HSTYLTLNKI 180 TPFIRFIHLT ANQAILEAVD GETNIHILDF DIMQGFQWPL FMQALSERYS SSASPNHHPP 240 PMLRITGTGH DLDVLMRTGE RLLKFAQSLN LRFQFHPLLL HHTADLSSLL APLLLPDDTL 300 AINFVLYLHK FTDETLYKLL STIKSLNPRI VTFSEREANH KTPVFLHRFV EALDHYSAIF 360 NSLEANLPPS SQERLAVEQL WFGREILDIV GMQGGNRREM HRRFESWEVI LRSSGFSKVP 420 LSSFAFSQAK LLLRLHYPSE GYKIQNLSDC FFLSWKNRLL FSISSWH* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 2e-57 | 73 | 467 | 4 | 375 | GRAS family transcription factor containing protein, expressed |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor required for axillary (lateral) shoot meristem formation during vegetative development. Seems to act upstream of REVOLUTA. {ECO:0000269|PubMed:12730136}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002265645.1 | 1e-158 | PREDICTED: scarecrow-like protein 18 | ||||
Swissprot | Q9ZWC5 | 1e-113 | SCL18_ARATH; Scarecrow-like protein 18 | ||||
TrEMBL | I0AZ47 | 1e-160 | I0AZ47_9ROSI; GRAS family protein (Fragment) | ||||
STRING | VIT_19s0015g01930.t01 | 1e-157 | (Vitis vinifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G55580.1 | 1e-109 | GRAS family protein |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0198s0035.1.p |
Publications ? help Back to Top | |||
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