PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0198s0033.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

GRAS

Protein Properties

Length: 468aa MW: 52581.9 Da PI: 6.9079

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0198s0033.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	374.9	1e-114	74	466	2	373
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn.....sseelaal..... 81 +lL++cAe s++d+++a++lLa l e++spdgd+++Rl+++f++A++ l+ + +++ + +pp s+ + + + + Kalax.0198s0033.1.p 74 LQLLIKCAELTSQSDFSAAHRLLALLLERSSPDGDSNERLVHHFAKAISYALNYTNPTMNNFIPPFMHSSPSsaispV---V--Tannsf 158 689*************************************************999999999776665444343331...2..134667 PP GRAS 82 ................klfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp........egppslRiTgv 147 ++++++P+++f hltaNqaIleav+ge+ +Hi+Dfdi+qG+QWp ++qaL++R ++pp+lRiTg Kalax.0198s0033.1.p 159 tldhppsdalihhstyLTLNKITPFIRFIHLTANQAILEAVDGETNIHILDFDIMQGFQWPLFMQALSERYsssaspnhHPPPMLRITGT 248 889999999988876555************************************************9665555555599*** PP GRAS 148 gspesgskeeleetgerLakfAeelgvpfefnvlvakrledle..leeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvksls 235 g+ + + l +tgerL kfA++l+++f+f++l+ ++++dl+ l L + p+++la+n+vl lh++ + +l + +L+++ksl+ Kalax.0198s0033.1.p 249 GH----DLDVLMRTGERLLKFAQSLNLRFQFHPLLLHHTADLSslLAPL-LLPDDTLAINFVLYLHKFT--DETLYK----LLSTIKSLN 327 ....**************************777666662113333.678***********9..444555....***** PP GRAS 236 PkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFk 325 P++v+++e+ea+h ++ Fl+rf+eal++ysa+f+slea+lp+ s+er vE+ ++grei ++v ++g +rre h+++e+W+ l+++GF+ Kalax.0198s0033.1.p 328 PRIVTFSEREANHKTPVFLHRFVEALDHYSAIFNSLEANLPPSSQERLAVEQLWFGREILDIVGMQGGNRREMHRRFESWEVILRSSGFS 417 ************************************************************************************** PP GRAS 326 pvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaW 373 +vpls++a +qaklllr ++ s+gy++++ s++++l Wk+r L+s+S+W Kalax.0198s0033.1.p 418 KVPLSSFAFSQAKLLLRLHYpSEGYKIQNLSDCFFLSWKNRLLFSISSW 466 *********************************************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101447	5.49E-5	32	41	No hit	No description
PROSITE profile	PS50985	57.704	47	446	IPR005202	Transcription factor GRAS
Pfam	PF03514	3.6E-112	74	466	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010223	Biological Process	secondary shoot formation

Sequence ? help Back to Top
Protein Sequence Length: 468 aa Download sequence Send to blast
MGSVSSEDQE AHPSSSSSSD LAHNHFLQLT LPPPPPPPPP PLSLSSALSL TSSSTPSFQY 60 QNFNSLPATT PQMLQLLIKC AELTSQSDFS AAHRLLALLL ERSSPDGDSN ERLVHHFAKA 120 ISYALNYTNP TMNNFIPPFM HSSPSSAISP VVTANNSFTL DHPPSDALIH HSTYLTLNKI 180 TPFIRFIHLT ANQAILEAVD GETNIHILDF DIMQGFQWPL FMQALSERYS SSASPNHHPP 240 PMLRITGTGH DLDVLMRTGE RLLKFAQSLN LRFQFHPLLL HHTADLSSLL APLLLPDDTL 300 AINFVLYLHK FTDETLYKLL STIKSLNPRI VTFSEREANH KTPVFLHRFV EALDHYSAIF 360 NSLEANLPPS SQERLAVEQL WFGREILDIV GMQGGNRREM HRRFESWEVI LRSSGFSKVP 420 LSSFAFSQAK LLLRLHYPSE GYKIQNLSDC FFLSWKNRLL FSISSWH*

Sequence ? help Back to Top

Protein Sequence Length: 468 aa Download sequence Send to blast

MGSVSSEDQE AHPSSSSSSD LAHNHFLQLT LPPPPPPPPP PLSLSSALSL TSSSTPSFQY  60
QNFNSLPATT PQMLQLLIKC AELTSQSDFS AAHRLLALLL ERSSPDGDSN ERLVHHFAKA  120
ISYALNYTNP TMNNFIPPFM HSSPSSAISP VVTANNSFTL DHPPSDALIH HSTYLTLNKI  180
TPFIRFIHLT ANQAILEAVD GETNIHILDF DIMQGFQWPL FMQALSERYS SSASPNHHPP  240
PMLRITGTGH DLDVLMRTGE RLLKFAQSLN LRFQFHPLLL HHTADLSSLL APLLLPDDTL  300
AINFVLYLHK FTDETLYKLL STIKSLNPRI VTFSEREANH KTPVFLHRFV EALDHYSAIF  360
NSLEANLPPS SQERLAVEQL WFGREILDIV GMQGGNRREM HRRFESWEVI LRSSGFSKVP  420
LSSFAFSQAK LLLRLHYPSE GYKIQNLSDC FFLSWKNRLL FSISSWH*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	3e-57	73	467	4	375	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor required for axillary (lateral) shoot meristem formation during vegetative development. Seems to act upstream of REVOLUTA. {ECO:0000269\|PubMed:12730136}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002265645.1	1e-158	PREDICTED: scarecrow-like protein 18
Swissprot	Q9ZWC5	1e-114	SCL18_ARATH; Scarecrow-like protein 18
TrEMBL	V5NBF3	1e-160	V5NBF3_9ROSI; Lateral
STRING	VIT_19s0015g01930.t01	1e-158	(Vitis vinifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G55580.1	1e-110	GRAS family protein

Link Out ? help Back to Top
Phytozome	Kalax.0198s0033.1.p

Publications ? help Back to Top
Zhang B, et al. Novel function of a putative MOC1 ortholog associated with spikelet number per spike in common wheat. Sci Rep, 2015. 5: p. 12211 [PMID:26197925]