PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0197s0026.3.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family bHLH
Protein Properties Length: 550aa    MW: 60625.5 Da    PI: 9.0002
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0197s0026.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH58.21.5e-18257306255
                          HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          r +h++ E+rRR++iN++f+ Lre++P++    ++K +Ka+ L +A+eYI+ Lq
  Kalax.0197s0026.3.p 257 RSKHSATEQRRRSKINDRFQMLREIIPHS----DQKRDKASFLLEAIEYIQFLQ 306
                          889*************************9....9*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.104.7E-23253322IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.072255305IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.27E-18255314IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.48E-15257309No hitNo description
PfamPF000105.5E-16257306IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.9E-13261311IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 550 aa     Download sequence    Send to blast
MELPRSFGPQ GTKPTHDFLS LYTTTSTTSH SQDPLLSPGS FLKTQNFLQP LEQVEMPGVN  60
DPAAISVNDK IQLPAASHLP PTSVEHILPG GIGTYTISHI SCINQVSKPE VSLFTAVQAN  120
SNERNDDNSN SSSQTGSGFT LWEESAVNMG KTGKEKVREG RSIVREPASK LGKWAAERSS  180
QSSLNQRGSF APASSSQVAA HKNRSLMNLI VSTTNTREDE HREMDFVIKK EGSPSEREES  240
KMRAERKNDE RKANTPRSKH SATEQRRRSK INDRFQMLRE IIPHSDQKRD KASFLLEAIE  300
YIQFLQEKVY RYEGSFPGWN HESTKRIPLR NNHKPAKGFV DHGGSGTTSP FSTKFSDKNI  360
GAPSIVSRVV QKQVESDNNP IAFQMNDQHL VRADMIVASP IPLQPKVFVE NGGTTTIFPP  420
KLVSDMETAT SQHTQREDVR RCEIDCATAS NDQELAIEGG TINISSTYSQ GFLSTLTQAL  480
QSLGVDLSQS RISVQIDLGK QNNIKLGSTT TMTKVDELNS TSHVKTNSTS PHTSEYSGQA  540
VKRLKTGNQ*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019082147.11e-157PREDICTED: transcription factor BIM1
TrEMBLA0A067KHS21e-155A0A067KHS2_JATCU; Uncharacterized protein
STRINGVIT_17s0000g04790.t011e-155(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08130.44e-74bHLH family protein