PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0197s0026.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | bHLH | ||||||||
Protein Properties | Length: 559aa MW: 61618.6 Da PI: 8.7445 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 58.2 | 1.5e-18 | 266 | 315 | 2 | 55 |
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r +h++ E+rRR++iN++f+ Lre++P++ ++K +Ka+ L +A+eYI+ Lq Kalax.0197s0026.1.p 266 RSKHSATEQRRRSKINDRFQMLREIIPHS----DQKRDKASFLLEAIEYIQFLQ 315 889*************************9....9*******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.280.10 | 4.8E-23 | 262 | 331 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 3.4E-18 | 264 | 323 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 17.072 | 264 | 314 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.15E-15 | 266 | 318 | No hit | No description |
Pfam | PF00010 | 5.7E-16 | 266 | 315 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.9E-13 | 270 | 320 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 559 aa Download sequence Send to blast |
MELPRSFGPQ GTKPTHDFLS LYTTTSTTSH SQDPLLSPGS FLKTQNFLQP LEQVEMPGVN 60 DPAAISVNDK IQLPAASHLP PTSVEHILPG GIGTYTISHI SCINQVSKPE VSLFTAVQAN 120 SNERNDDNSN SSSQTGSGFT LWEESAVNMG KTGKEKVREG RSIVREPASK LGKWAAERSS 180 QSSLNQRGSF APASSSQVAA HKNRSLMNLI VSTTNTREDE HREMDFVIKK EGSPSERVTE 240 TSIFNTEESK MRAERKNDER KANTPRSKHS ATEQRRRSKI NDRFQMLREI IPHSDQKRDK 300 ASFLLEAIEY IQFLQEKVYR YEGSFPGWNH ESTKRIPLRN NHKPAKGFVD HGGSGTTSPF 360 STKFSDKNIG APSIVSRVVQ KQVESDNNPI AFQMNDQHLV RADMIVASPI PLQPKVFVEN 420 GGTTTIFPPK LVSDMETATS QHTQREDVRR CEIDCATASN DQELAIEGGT INISSTYSQG 480 FLSTLTQALQ SLGVDLSQSR ISVQIDLGKQ NNIKLGSTTT MTKVDELNST SHVKTNSTSP 540 HTSEYSGQAV KRLKTGNQ* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019082147.1 | 1e-156 | PREDICTED: transcription factor BIM1 | ||||
TrEMBL | A0A2I4EX35 | 1e-153 | A0A2I4EX35_JUGRE; transcription factor BIM1-like | ||||
STRING | VIT_17s0000g04790.t01 | 1e-153 | (Vitis vinifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G08130.4 | 9e-73 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0197s0026.1.p |