PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0197s0020.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB
Protein Properties Length: 470aa    MW: 52509.2 Da    PI: 9.6926
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0197s0020.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.74.1e-164084348
                         SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                          WT+e+d ll da ++  g+ Wk+Ia++++ g+t+ qc +r+qk+l
  Kalax.0197s0020.1.p 40 GWTPELDTLLMDAYHKCKGRPWKKIAEMVP-GKTDVQCLHRYQKVL 84
                         6*****************************.************986 PP
2Myb_DNA-binding62.11.1e-1990136148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          +g+WT eEd ll ++v++lG ++W+ Ia+ ++ gR +kqc++rw+++l
  Kalax.0197s0020.1.p  90 KGPWTSEEDNLLCELVEKLGDKRWSEIAKDLP-GRIGKQCRERWNNHL 136
                          79******************************.*************97 PP
3Myb_DNA-binding49.11.3e-15142184145
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                          r +WT+ Ed  + +a+++ G++ W+ Ia+ ++ gRt++++k+rw+
  Kalax.0197s0020.1.p 142 RSPWTKKEDSVIMRAHHENGNK-WAEIAKLLP-GRTENSIKNRWN 184
                          789*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.2323384IPR017930Myb domain
SMARTSM007171.0E-83786IPR001005SANT/Myb domain
PfamPF002491.5E-133984IPR001005SANT/Myb domain
SuperFamilySSF466894.52E-163998IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.608.2E-184096IPR009057Homeodomain-like
CDDcd001673.70E-94184No hitNo description
PROSITE profilePS5129431.49885140IPR017930Myb domain
SuperFamilySSF466891.11E-3187183IPR009057Homeodomain-like
SMARTSM007175.4E-1989138IPR001005SANT/Myb domain
PfamPF002491.2E-1890136IPR001005SANT/Myb domain
CDDcd001671.00E-1592136No hitNo description
Gene3DG3DSA:1.10.10.603.7E-2797143IPR009057Homeodomain-like
SMARTSM007173.4E-14141189IPR001005SANT/Myb domain
PfamPF002491.8E-14142184IPR001005SANT/Myb domain
PROSITE profilePS5129419.613142191IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.3E-22144192IPR009057Homeodomain-like
CDDcd001672.07E-10144184No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 470 aa     Download sequence    Send to blast
MAAAVELEGS ADDSENSHGA DFADAAKRVT GPKRRSTVGG WTPELDTLLM DAYHKCKGRP  60
WKKIAEMVPG KTDVQCLHRY QKVLHPSVHK GPWTSEEDNL LCELVEKLGD KRWSEIAKDL  120
PGRIGKQCRE RWNNHLKPSI DRSPWTKKED SVIMRAHHEN GNKWAEIAKL LPGRTENSIK  180
NRWNCSLKKK LVIWGNPQIL EEQLTSEGYP VKPLPECKRN VAVKNYLSVS NGSPNNRMKD  240
LHHTEQVQLP NKSSAPNVRS QNKEETRGGF NNFQTDSSCV SASRQLEMGT NVYFPSSLAS  300
VTRHGGGEPR ELNANWHRGF CYKSTNLINN YRSLVDKSSG GMLNVLAAPA RQEASLSSPV  360
NQIEISAALT GSPEAILRSK ATSYKYVPSI IRKRRFEASP GTTTPCNKSQ KLDEGGVRLG  420
WSQCFDTEEL PLSVPSQTPK LESYTGRNKS VEKRLEREFD AVWHSSAKP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C4e-54391919159MYB PROTO-ONCOGENE PROTEIN
1h89_C4e-54391919159MYB PROTO-ONCOGENE PROTEIN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02320.24e-73myb domain protein 3r-5