PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0196s0062.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB
Protein Properties Length: 388aa    MW: 43397.4 Da    PI: 5.5829
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0196s0062.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.33.2e-17123169148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          +g W+ e d ll+++v+++G + W++Ia++++ gR +kqc++rw+++l
  Kalax.0196s0062.1.p 123 KGQWSLEQDMLLIQLVERYGIRKWSLIAQMLP-GRIGKQCRERWHNHL 169
                          799*****************************.*************97 PP
2Myb_DNA-binding58.51.5e-18177217345
                          SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
      Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                           W++eEde+l++a+k+ G++ W+ Ia++++ gRt++++k++w+
  Kalax.0196s0062.1.p 177 IWSEEEDEILIRAHKEIGNK-WSEIAKRLP-GRTENSIKNHWN 217
                          6*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129426.176118173IPR017930Myb domain
SuperFamilySSF466891.8E-31120216IPR009057Homeodomain-like
SMARTSM007171.9E-15122171IPR001005SANT/Myb domain
PfamPF002497.9E-16123169IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.8E-27124177IPR009057Homeodomain-like
CDDcd001671.10E-14126169No hitNo description
SMARTSM007175.5E-17174222IPR001005SANT/Myb domain
PROSITE profilePS5129420.785174224IPR017930Myb domain
CDDcd001671.65E-14178220No hitNo description
PfamPF002491.4E-16178217IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.3E-22178222IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 388 aa     Download sequence    Send to blast
MMNLDEQAMC FSDDNYSTRP SIGSSSSGLD AFSPYDRFLS GDPAYGLIPG RASPLLDSFC  60
SYGQMARFYA KGSGYQELEP VSNLMAMRNS NVAPDEVSNV AAHGDRSRAR RKGANKAIQD  120
VIKGQWSLEQ DMLLIQLVER YGIRKWSLIA QMLPGRIGKQ CRERWHNHLR PDIKKDIWSE  180
EEDEILIRAH KEIGNKWSEI AKRLPGRTEN SIKNHWNATK RKQNAKRKTR SKNPKSSSLL  240
LQYIRGLNCS SNDGSSTKPC DARKKGARSR ASENEGKSPE HQGRIQVVDC GLEFSSEDRL  300
VPDYGEFGDV PDLDFMDDDK LFGEDGSIDS FLDSIEFLPS FDDGGNGEEK GEIREEVGAA  360
DRGAEERDGG GVRRDMDLVE MISQQVK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-441172231107B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the motif 5'-GTAACNT-3' in the promoter of target genes (e.g. DD11 and DD18) and promotes their expression within synergid cells (e.g. in the filiform apparatus) in ovules (PubMed:16214903, PubMed:17693534, PubMed:18410484, PubMed:17937500). Required for the formation of the filiform apparatus during synergid cell differentiation in the female gametophyte (PubMed:16214903). Involved in pollen tube guidance to the micropyle (PubMed:16214903, PubMed:17937500, PubMed:23093426). {ECO:0000269|PubMed:16214903, ECO:0000269|PubMed:17693534, ECO:0000269|PubMed:17937500, ECO:0000269|PubMed:18410484, ECO:0000269|PubMed:23093426}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
SwissprotQ9S7L24e-72MYB98_ARATH; Transcription factor MYB98
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18770.12e-74myb domain protein 98
Publications ? help Back to Top
  1. Mendes MA, et al.
    Live and let die: a REM complex promotes fertilization through synergid cell death in Arabidopsis.
    Development, 2016. 143(15): p. 2780-90
    [PMID:27338615]