PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0196s0053.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB
Protein Properties Length: 333aa    MW: 36557.7 Da    PI: 7.422
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0196s0053.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.67.7e-152067148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         rg W+++Ede+l  ++ + G g+W+++++  g+ R++k+c++rw +yl
  Kalax.0196s0053.1.p 20 RGLWSPDEDEKLFSYIIRNGVGCWSSVPKLAGLQRCGKSCRLRWINYL 67
                         788*******************************************97 PP
2Myb_DNA-binding50.35.7e-1673116146
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          rg++++ E+el+v ++++lG++ W+ Ia+ ++ gRt++++k++w++
  Kalax.0196s0053.1.p  73 RGSFSQKEEELIVSLHELLGNR-WAQIAAQLP-GRTDNEIKNFWNS 116
                          899*******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.3E-211570IPR009057Homeodomain-like
PROSITE profilePS5129416.7891567IPR017930Myb domain
SuperFamilySSF466892.77E-2717114IPR009057Homeodomain-like
SMARTSM007177.6E-111969IPR001005SANT/Myb domain
PfamPF002491.7E-132067IPR001005SANT/Myb domain
CDDcd001677.22E-102367No hitNo description
PROSITE profilePS5129425.80268122IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.0E-2671123IPR009057Homeodomain-like
SMARTSM007174.2E-1572120IPR001005SANT/Myb domain
PfamPF002491.3E-1473117IPR001005SANT/Myb domain
CDDcd001678.86E-1175115No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MGRNLCSTST TTAARQRVRR GLWSPDEDEK LFSYIIRNGV GCWSSVPKLA GLQRCGKSCR  60
LRWINYLRPD LKRGSFSQKE EELIVSLHEL LGNRWAQIAA QLPGRTDNEI KNFWNSCLKK  120
KLISQGIDPS THKPAASEIQ AKKRAQETSG SVKNGGEVST GDEAKFPVDE SRYYESKPLF  180
GASSLPATTQ FEIFGVGYGS NVINPFPHVT RPGFDSRPPS QFSAYAAGLL NCERGGVRET  240
HFSDMSGSSS TSNISHSYGV TQSIGQAAAA SFSWAEGGKK LETLFQLPDF IKSQEQDPSP  300
WAQNSSDDFN SYPALSLSED LSGLDFEVFQ ET*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-27201227108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028126248.17e-94transcription factor MYB86-like isoform X2
SwissprotQ8LPH67e-70MYB86_ARATH; Transcription factor MYB86
TrEMBLA0A061FTT78e-92A0A061FTT7_THECC; Myb domain protein 86
STRINGEOY208351e-92(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26660.14e-72myb domain protein 86