PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0195s0001.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family ERF
Protein Properties Length: 128aa    MW: 14372.3 Da    PI: 11.2333
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0195s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP250.64.9e-162573355
                  AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                         y GVr +k +g+WvAeIr+p++   r r++lg++ ta  Aa+a++ a   l+g
  Kalax.0195s0001.1.p 25 YNGVRMRK-WGKWVAEIREPRK---RSRIWLGTYKTAVAAARAHDVALFHLRG 73
                         78***999.**********954...5**********************99998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.0E-292482IPR001471AP2/ERF domain
SMARTSM003801.6E-332487IPR001471AP2/ERF domain
PROSITE profilePS5103221.9572481IPR001471AP2/ERF domain
PfamPF008471.7E-102573IPR001471AP2/ERF domain
SuperFamilySSF541714.12E-202582IPR016177DNA-binding domain
PRINTSPR003674.2E-92536IPR001471AP2/ERF domain
CDDcd000189.27E-242583No hitNo description
PRINTSPR003674.2E-94763IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 128 aa     Download sequence    Send to blast
MEDKQRGGSS QGRAVFGAGR AGREYNGVRM RKWGKWVAEI REPRKRSRIW LGTYKTAVAA  60
ARAHDVALFH LRGRSEKLNF PEHFAGRVSV EMSAEEIRRM ATAVGAEVDA DELGMRRRKA  120
ADEPSRCG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-152281363ATERF1
3gcc_A3e-152281363ATERF1
5wx9_A4e-151784775Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015889855.11e-36ethylene-responsive transcription factor RAP2-10
SwissprotQ9FH942e-34ERF10_ARATH; Ethylene-responsive transcription factor ERF010
TrEMBLA0A1U8A9R88e-35A0A1U8A9R8_NELNU; ethylene-responsive transcription factor ERF008-like
STRINGXP_010263467.11e-35(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50260.11e-29cooperatively regulated by ethylene and jasmonate 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]