PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0191s0030.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family SBP
Protein Properties Length: 546aa    MW: 59777.8 Da    PI: 6.977
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0191s0030.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP131.92.3e-41171246277
                          -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
                  SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 
                          Cqv+gC++dls+ k+yh+rh+vC++hsk+++v+v+g+eqrfCqqCsrfh l efDe+krsCrrrLa+hnerrrk++
  Kalax.0191s0030.1.p 171 CQVHGCNKDLSSSKDYHKRHRVCDTHSKTAKVIVKGIEQRFCQQCSRFHLLAEFDEGKRSCRRRLAGHNERRRKPH 246
                          **************************************************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.104.4E-32167232IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.479168245IPR004333Transcription factor, SBP-box
SuperFamilySSF1036123.92E-37170248IPR004333Transcription factor, SBP-box
PfamPF031101.0E-31171244IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 546 aa     Download sequence    Send to blast
MQPHVMESWC QKGSVSGDLV YAPDSLGRHS KLLEVNGPVL GDDKLISEKG SDSIIEEVRY  60
STLSGNPFLT NFAWDVRFNK DSTGEQIAPT MSSPNLFLAD DGFSSKLPSP FSDSNCQEST  120
PIDLKLGRLA DYGGSKTFKL FPGSSMIFSA ESSTPIKRTR SAGLNCQTFS CQVHGCNKDL  180
SSSKDYHKRH RVCDTHSKTA KVIVKGIEQR FCQQCSRFHL LAEFDEGKRS CRRRLAGHNE  240
RRRKPHMGKH CGRSGRFQSY HGGAFNGISF TKTSSVCENI VPTNQLQLEK LGENGWNQHI  300
KLEFESDYNN LFGFLPANGN LLPKSSLPDV NLGKQYPCLY EGQANHLLRS VTTRSTGDDY  360
SHGMPGLPCS DLSYSVTSGG DQDSNVFCTE PAFNDFSTTM SPGALSLLSS QSQNSPNYST  420
GIPMTQASSI TGNPANCSGI PVSDTLLTAI PVASVNGMSH KLASCGLRSE ISNLCPILIP  480
DDRVGVHFED SELFHGLTAD TDRLSCEDEL TIDLLQLSSQ LQRVERQKQF VYATSHTTMN  540
TTARQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A2e-281712441184squamosa promoter binding protein-like 4
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69170.14e-44SBP family protein