PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0190s0028.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | GRAS | ||||||||
Protein Properties | Length: 539aa MW: 60502.4 Da PI: 5.4919 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 445.4 | 3.8e-136 | 167 | 538 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPi 90 l+e+Ll+ A+avs++dl a++l+++l++++s +g+pmqRl ay++e+L arl++s+s++yk+l+++e s++ l++++l++ev+P+ Kalax.0190s0028.2.p 167 LREVLLASAKAVSENDLVTAEWLMSQLNHMVSVSGEPMQRLGAYMLEGLIARLSSSGSSIYKSLRCKEPV--ASAKLLSYMHLLYEVCPY 254 6899***************************************************************997..6999************** PP GRAS 91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfef 178 +kf+++ aN aI ea+ e+r+HiiDf+i qG QW +L+qaL+++p gpp++RiTg+++p s+ + l +g+rL+kfAe+++vpfef Kalax.0190s0028.2.p 255 FKFGYMSANGAIAEAMRDENRIHIIDFQIAQGSQWFPLIQALSAQPCGPPQIRITGIDDPVSSyaRGGGLDIVGKRLSKFAESCNVPFEF 344 ************************************************************99999999********************** PP GRAS 179 nvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalf 268 ++ + +d+e+e+Lr+++gEa+aVn++++lh+++desv ++++rd++L+lvk lsPkvv++ve+e+++n+++F+ rfle+l+yy+a+f Kalax.0190s0028.2.p 345 CS-ATVSGSDIEYESLRIRHGEAIAVNFAFMLHHMPDESVGTQNHRDRLLRLVKCLSPKVVTLVEHESNTNTSPFFPRFLETLDYYAAIF 433 **.8999*********************************************************************************** PP GRAS 269 dsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgsl 358 +s++a+lpre+eeri+vE+++l+reivn+vacegaer+erhe l kW++r+ ++GF+p+pls+ +++++k+ll+++ + yr+ee++g+l Kalax.0190s0028.2.p 434 ESIDATLPREHEERINVEQHCLAREIVNIVACEGAERVERHELLTKWKSRFVMSGFSPYPLSSVVNATIKTLLENYCD-KYRLEEKDGAL 522 ****************************************************************************95.5********** PP GRAS 359 vlgWkdrpLvsvSaWr 374 +lgW++r+Lv+ SaWr Kalax.0190s0028.2.p 523 YLGWMNRALVASSAWR 538 ***************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 66.346 | 141 | 519 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.3E-133 | 167 | 538 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 539 aa Download sequence Send to blast |
MQTSRRHGFS DDYLKQYEDV DPYQWGSAQE SDGTQKAQSA RIINSVLHRT GGGSSSVNSR 60 IPSFDPPSSE SFPANDSPER QLDSQSFKSL MSYPIKHSHG IQAGVPNLNE EVEDFGDKLR 120 ELESVMFGPD LSTLYLPECA FYEGPEQSLL QTEKFRFFIQ MISRGDLREV LLASAKAVSE 180 NDLVTAEWLM SQLNHMVSVS GEPMQRLGAY MLEGLIARLS SSGSSIYKSL RCKEPVASAK 240 LLSYMHLLYE VCPYFKFGYM SANGAIAEAM RDENRIHIID FQIAQGSQWF PLIQALSAQP 300 CGPPQIRITG IDDPVSSYAR GGGLDIVGKR LSKFAESCNV PFEFCSATVS GSDIEYESLR 360 IRHGEAIAVN FAFMLHHMPD ESVGTQNHRD RLLRLVKCLS PKVVTLVEHE SNTNTSPFFP 420 RFLETLDYYA AIFESIDATL PREHEERINV EQHCLAREIV NIVACEGAER VERHELLTKW 480 KSRFVMSGFS PYPLSSVVNA TIKTLLENYC DKYRLEEKDG ALYLGWMNRA LVASSAWR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 1e-61 | 175 | 537 | 27 | 378 | Protein SCARECROW |
5b3h_A | 1e-61 | 175 | 537 | 26 | 377 | Protein SCARECROW |
5b3h_D | 1e-61 | 175 | 537 | 26 | 377 | Protein SCARECROW |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in phytochrome A (phyA) signal transduction. {ECO:0000269|PubMed:10817761}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012081428.1 | 0.0 | scarecrow-like transcription factor PAT1 | ||||
Refseq | XP_020537945.1 | 0.0 | scarecrow-like transcription factor PAT1 | ||||
Swissprot | Q9LDL7 | 0.0 | PAT1_ARATH; Scarecrow-like transcription factor PAT1 | ||||
TrEMBL | A0A2I4E017 | 0.0 | A0A2I4E017_JUGRE; scarecrow-like protein 21 | ||||
STRING | cassava4.1_004951m | 0.0 | (Manihot esculenta) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G48150.2 | 0.0 | GRAS family protein |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0190s0028.2.p |
Publications ? help Back to Top | |||
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