PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0190s0028.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family GRAS
Protein Properties Length: 539aa    MW: 60502.4 Da    PI: 5.4919
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0190s0028.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS445.43.8e-1361675381374
                 GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPi 90 
                          l+e+Ll+ A+avs++dl  a++l+++l++++s +g+pmqRl ay++e+L arl++s+s++yk+l+++e     s++ l++++l++ev+P+
  Kalax.0190s0028.1.p 167 LREVLLASAKAVSENDLVTAEWLMSQLNHMVSVSGEPMQRLGAYMLEGLIARLSSSGSSIYKSLRCKEPV--ASAKLLSYMHLLYEVCPY 254
                          6899***************************************************************997..6999************** PP

                 GRAS  91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfef 178
                          +kf+++ aN aI ea+  e+r+HiiDf+i qG QW +L+qaL+++p gpp++RiTg+++p s+  +   l  +g+rL+kfAe+++vpfef
  Kalax.0190s0028.1.p 255 FKFGYMSANGAIAEAMRDENRIHIIDFQIAQGSQWFPLIQALSAQPCGPPQIRITGIDDPVSSyaRGGGLDIVGKRLSKFAESCNVPFEF 344
                          ************************************************************99999999********************** PP

                 GRAS 179 nvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalf 268
                             ++ + +d+e+e+Lr+++gEa+aVn++++lh+++desv ++++rd++L+lvk lsPkvv++ve+e+++n+++F+ rfle+l+yy+a+f
  Kalax.0190s0028.1.p 345 CS-ATVSGSDIEYESLRIRHGEAIAVNFAFMLHHMPDESVGTQNHRDRLLRLVKCLSPKVVTLVEHESNTNTSPFFPRFLETLDYYAAIF 433
                          **.8999*********************************************************************************** PP

                 GRAS 269 dsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgsl 358
                          +s++a+lpre+eeri+vE+++l+reivn+vacegaer+erhe l kW++r+ ++GF+p+pls+ +++++k+ll+++ +  yr+ee++g+l
  Kalax.0190s0028.1.p 434 ESIDATLPREHEERINVEQHCLAREIVNIVACEGAERVERHELLTKWKSRFVMSGFSPYPLSSVVNATIKTLLENYCD-KYRLEEKDGAL 522
                          ****************************************************************************95.5********** PP

                 GRAS 359 vlgWkdrpLvsvSaWr 374
                          +lgW++r+Lv+ SaWr
  Kalax.0190s0028.1.p 523 YLGWMNRALVASSAWR 538
                          ***************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098566.346141519IPR005202Transcription factor GRAS
PfamPF035141.3E-133167538IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 539 aa     Download sequence    Send to blast
MQTSRRHGFS DDYLKQYEDV DPYQWGSAQE SDGTQKAQSA RIINSVLHRT GGGSSSVNSR  60
IPSFDPPSSE SFPANDSPER QLDSQSFKSL MSYPIKHSHG IQAGVPNLNE EVEDFGDKLR  120
ELESVMFGPD LSTLYLPECA FYEGPEQSLL QTEKFRFFIQ MISRGDLREV LLASAKAVSE  180
NDLVTAEWLM SQLNHMVSVS GEPMQRLGAY MLEGLIARLS SSGSSIYKSL RCKEPVASAK  240
LLSYMHLLYE VCPYFKFGYM SANGAIAEAM RDENRIHIID FQIAQGSQWF PLIQALSAQP  300
CGPPQIRITG IDDPVSSYAR GGGLDIVGKR LSKFAESCNV PFEFCSATVS GSDIEYESLR  360
IRHGEAIAVN FAFMLHHMPD ESVGTQNHRD RLLRLVKCLS PKVVTLVEHE SNTNTSPFFP  420
RFLETLDYYA AIFESIDATL PREHEERINV EQHCLAREIV NIVACEGAER VERHELLTKW  480
KSRFVMSGFS PYPLSSVVNA TIKTLLENYC DKYRLEEKDG ALYLGWMNRA LVASSAWR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-6117553727378Protein SCARECROW
5b3h_A1e-6117553726377Protein SCARECROW
5b3h_D1e-6117553726377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in phytochrome A (phyA) signal transduction. {ECO:0000269|PubMed:10817761}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012081428.10.0scarecrow-like transcription factor PAT1
RefseqXP_020537945.10.0scarecrow-like transcription factor PAT1
SwissprotQ9LDL70.0PAT1_ARATH; Scarecrow-like transcription factor PAT1
TrEMBLA0A2I4E0170.0A0A2I4E017_JUGRE; scarecrow-like protein 21
STRINGcassava4.1_004951m0.0(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.20.0GRAS family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Heyman J, et al.
    The heterodimeric transcription factor complex ERF115-PAT1 grants regeneration competence.
    Nat Plants, 2016. 2(11): p. 16165
    [PMID:27797356]