PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0188s0023.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family ERF
Protein Properties Length: 263aa    MW: 28895.7 Da    PI: 9.3044
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0188s0023.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.31.8e-18114164255
                  AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          +y+GVr+++ +g+++AeIrdp+ +g  +r++lg++ t  eAa+a+++a+ +l+g
  Kalax.0188s0023.1.p 114 HYRGVRQRP-WGKFAAEIRDPKRRG--ARVWLGTYETDVEAARAYDRAAFELRG 164
                          7********.**********96554..**********99*************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.103.9E-31113173IPR001471AP2/ERF domain
PfamPF008476.5E-14114164IPR001471AP2/ERF domain
PROSITE profilePS5103223.868114172IPR001471AP2/ERF domain
SuperFamilySSF541716.21E-22114174IPR016177DNA-binding domain
SMARTSM003802.4E-36114178IPR001471AP2/ERF domain
CDDcd000187.10E-28114172No hitNo description
PRINTSPR003676.7E-13115126IPR001471AP2/ERF domain
PRINTSPR003676.7E-13154174IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MAAAADFSAL QLIKQHLFDG LASPLLKPEP SASQTQMAQI PDSLELDGVY TSLVSSDLGA  60
VDLARRKPSV SSRKPALNIS LPSKTEWNEY AEPTQPQLAA AASKPAPKRS DRRHYRGVRQ  120
RPWGKFAAEI RDPKRRGARV WLGTYETDVE AARAYDRAAF ELRGCKAILN FPLELAQSMD  180
KPPAVGVRRL RSEAEERPEA KKVKTEEGVD GVNEMALTPS SWTAFWNFDD NGNTKSNGML  240
DWPLTSPLSP HPALGYSQLI VL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-28113175466ATERF1
3gcc_A3e-28113175466ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:9756931}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Ethylene induction is completely dependent on a functional ETHYLENE-INSENSITIVE2 (EIN2). Wounding as well as cold stress induction does not require EIN2. Transcripts accumulate strongly in cycloheximide-treated plants, a protein synthesis inhibitor. Seems to not be influenced by jasmonate, Alternaria brassicicola, exogenous abscisic acid (ABA), cold, heat, NaCl or drought stress. {ECO:0000269|PubMed:10715325}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010275423.11e-60PREDICTED: ethylene-responsive transcription factor ERF105-like
SwissprotO803417e-54EF102_ARATH; Ethylene-responsive transcription factor 5
TrEMBLA0A1U8BFY13e-59A0A1U8BFY1_NELNU; ethylene-responsive transcription factor ERF105-like
STRINGXP_010275423.16e-60(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47230.18e-55ethylene responsive element binding factor 5
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]