PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0188s0012.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family GATA
Protein Properties Length: 547aa    MW: 60808.8 Da    PI: 8.0682
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0188s0012.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA467.3e-15741135
                 GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                         C +Cg+t+TplWR+gp  ++ LCnaCG ++r kg+
  Kalax.0188s0012.1.p  7 CCHCGVTNTPLWRNGPADKPVLCNACGSRWRTKGS 41
                         99**************77777***********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004018.3E-7155IPR000679Zinc finger, GATA-type
SuperFamilySSF577165.7E-11546No hitNo description
CDDcd002021.73E-15655No hitNo description
PfamPF003201.7E-12741IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.4E-11741IPR013088Zinc finger, NHR/GATA-type
PROSITE profilePS5011411.279740IPR000679Zinc finger, GATA-type
PfamPF139193.8E-8285378IPR028020ASX homology domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 547 aa     Download sequence    Send to blast
MGKQGPCCHC GVTNTPLWRN GPADKPVLCN ACGSRWRTKG SLTNYTPLHA RAEPEDYEIN  60
KHPRAKTISI NKQKEVKLVK RKQFYEAECR SMGGAFSDSR SLSNYMDQDA SYRSSSGSAI  120
SNSESCGQFS KVEASELTDP DKSIIFDSVV TPKKKIVIPR SKPSPVQKLT RDLCTILHEQ  180
QQSYFSGSSE EDLLFNTATP MASMETGHGS VLIRHPSSIG QEEESEASSL TFDNKPCPGL  240
RSCLTPHNLV VNNKIKDSKF QFSGLEKSRK FSDLEMQQEQ IKRAKLQNEK LQILGNHNSP  300
LRTVDLKEIL NFKEFATHLT TEEHHRLLKY LPPSDIAPFP ESLITMFDSA HFVENLSSFQ  360
QLLAEGVFDI TLSGVKAEDC KTLRRFALSN LTKSKWVEHY NLLKKCRNGF TSSVVPGMHS  420
GVATMNITKI KRPRDGSDTD LPDAKSAMKC PKRVTLKDMD KNKTALDNTA SCFSPKNLFA  480
LPPDNSSLAL DSFQYADDNA EQEDLLLDVP LSNSFPQAEL LHPTSNHGAL LTSPCSSSVY  540
PNLIRH*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021639112.10.0GATA transcription factor 26-like
TrEMBLA5B7D80.0A5B7D8_VITVI; Uncharacterized protein
STRINGPOPTR_0003s08080.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17570.31e-121GATA transcription factor 26