PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0187s0032.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

GRAS

Protein Properties

Length: 698aa MW: 76111.3 Da PI: 6.1355

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0187s0032.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	320.2	4.2e-98	333	696	2	374
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn....sseelaalklfsev 87 ve +++++e ++ g+l laq +Larl+++ sp g+p+qR+a+yf+e L+ l ++++ + ++ ++ ++ ++ ++ a+k fse+ Kalax.0187s0032.1.p 333 VEDIFKAVELIQVGNLVLAQGILARLNHQLSPIGKPFQRIAFYFKESLQLLLEMNGNSSNVTTSTALSN-YSpsfgHILKIGAYKSFSEA 421 678999*****************************************99987333333222222222.2245679999999*** PP GRAS 88 sPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfe 177 sP++ f+++t+NqaIle+veg +++H++Dfdi++G+QW++L+q+La R++g+psl+iT+++sp++++ e + e+L++fA+e++++fe Kalax.0187s0032.1.p 422 SPVVHFANFTCNQAILESVEGFDKIHVVDFDIGYGGQWASLMQELALRNGGTPSLKITAFASPSTHDDLEFGLVLENLNQFASEVKLKFE 511 ************************************************************************************** PP GRAS 178 fnvlvakrledleleeLrvkp..gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyys 265 ++ +l++l+ L+v++ gEa++Vnl ++ + + ++sl+ vL++vk+lsPk+vv ++ +d+n+ +F ++ ++al+ y+ Kalax.0187s0032.1.p 512 LRI---GSLDALTSMPLHVSNgeGEAIVVNLPVAALSCY--PMSLPL----VLRVVKQLSPKIVVSLDRGCDRNDLPFPHHTVHALQSYT 592 9...699*********9999*****999998..666666....*********************************** PP GRAS 266 alfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveees 355 al++sl+a++ + ++ +k+Er++++++i+ ++ ++ e+ + Wr+ + ++GF+p+++s+ +++qa++l+++++ g++ve+++ Kalax.0187s0032.1.p 593 ALLESLDASV-MNLDALQKIERFFIHPSIERMLVSRHLC----PEKISPWRSIFLSSGFSPYQFSNITESQADYLVQRTPAGGFHVEKRQ 677 *****7.666999************999998....9****************************************** PP GRAS 356 gslvlgWkdrpLvsvSaWr 374 s+vl+W++++Lvs+SaWr Kalax.0187s0032.1.p 678 SSVVLCWQQKELVSASAWR 696 ****************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	44.158	306	676	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.5E-95	333	696	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 698 aa Download sequence Send to blast
MPLPFEIEGK GVLDFEYSDS VHHHPQSELL LAAWTDKQLL EQASSCCHLL GSEPTSVLDA 60 RRSLSLSPSP PNSTSTLSSS LGSSGSGRST AVAGQEKCGV GMDEFENVLS DFGAGVAPPG 120 ATPSPDQSLL GYFFGDHDQV HDPGLVSFNK FMQGSVAPDF DMGTGMSESC STFPLCNNGS 180 VGYGSIPNAI FGQLGSNTVP VAVSQHQHQY QQLMGSFEEK PQVFNPNFAI NQHQIQPSEN 240 PSLFLPMGFG QQEHHGLILP PHPKRLNTGM MLEQGVNNLQ IPKIPFSLQN QHDPGIGHKL 300 QLHSNPPPTR FQTGMTKGRG EEALLGSHQQ VMVEDIFKAV ELIQVGNLVL AQGILARLNH 360 QLSPIGKPFQ RIAFYFKESL QLLLEMNGNS SNVTTSTALS NYSPSFGHIL KIGAYKSFSE 420 ASPVVHFANF TCNQAILESV EGFDKIHVVD FDIGYGGQWA SLMQELALRN GGTPSLKITA 480 FASPSTHDDL EFGLVLENLN QFASEVKLKF ELRIGSLDAL TSMPLHVSNG EGEAIVVNLP 540 VAALSCYPMS LPLVLRVVKQ LSPKIVVSLD RGCDRNDLPF PHHTVHALQS YTALLESLDA 600 SVMNLDALQK IERFFIHPSI ERMLVSRHLC PEKISPWRSI FLSSGFSPYQ FSNITESQAD 660 YLVQRTPAGG FHVEKRQSSV VLCWQQKELV SASAWRC*

Sequence ? help Back to Top

Protein Sequence Length: 698 aa Download sequence Send to blast

MPLPFEIEGK GVLDFEYSDS VHHHPQSELL LAAWTDKQLL EQASSCCHLL GSEPTSVLDA  60
RRSLSLSPSP PNSTSTLSSS LGSSGSGRST AVAGQEKCGV GMDEFENVLS DFGAGVAPPG  120
ATPSPDQSLL GYFFGDHDQV HDPGLVSFNK FMQGSVAPDF DMGTGMSESC STFPLCNNGS  180
VGYGSIPNAI FGQLGSNTVP VAVSQHQHQY QQLMGSFEEK PQVFNPNFAI NQHQIQPSEN  240
PSLFLPMGFG QQEHHGLILP PHPKRLNTGM MLEQGVNNLQ IPKIPFSLQN QHDPGIGHKL  300
QLHSNPPPTR FQTGMTKGRG EEALLGSHQQ VMVEDIFKAV ELIQVGNLVL AQGILARLNH  360
QLSPIGKPFQ RIAFYFKESL QLLLEMNGNS SNVTTSTALS NYSPSFGHIL KIGAYKSFSE  420
ASPVVHFANF TCNQAILESV EGFDKIHVVD FDIGYGGQWA SLMQELALRN GGTPSLKITA  480
FASPSTHDDL EFGLVLENLN QFASEVKLKF ELRIGSLDAL TSMPLHVSNG EGEAIVVNLP  540
VAALSCYPMS LPLVLRVVKQ LSPKIVVSLD RGCDRNDLPF PHHTVHALQS YTALLESLDA  600
SVMNLDALQK IERFFIHPSI ERMLVSRHLC PEKISPWRSI FLSSGFSPYQ FSNITESQAD  660
YLVQRTPAGG FHVEKRQSSV VLCWQQKELV SASAWRC*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	4e-29	350	696	21	375	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010661679.1	0.0	PREDICTED: scarecrow-like protein 27
Swissprot	O81316	1e-124	SCL6_ARATH; Scarecrow-like protein 6
TrEMBL	A0A438GXI9	0.0	A0A438GXI9_VITVI; Scarecrow-like protein 6
STRING	VIT_15s0048g00270.t01	0.0	(Vitis vinifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00150.1	1e-126	GRAS family protein

Link Out ? help Back to Top
Phytozome	Kalax.0187s0032.1.p

Publications ? help Back to Top
Bari A,Orazova S,Ivashchenko A miR156- and miR171-binding sites in the protein-coding sequences of several plant genes. Biomed Res Int, 2013. 2013: p. 307145 [PMID:23936788] Xue XY, et al. Interaction between two timing microRNAs controls trichome distribution in Arabidopsis. PLoS Genet., 2014. 10(4): p. e1004266 [PMID:24699192]