PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0187s0023.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | SBP | ||||||||
Protein Properties | Length: 352aa MW: 38603.3 Da PI: 8.2692 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 131.3 | 3.5e-41 | 200 | 277 | 1 | 78 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cq+egC+adls+ak+yhrrhkvCe+hsk+++v++ gl+qrfCqqCsrfh l+efD++krsCr+rLa+hn+rrrk+ + Kalax.0187s0023.1.p 200 RCQAEGCAADLSNAKHYHRRHKVCEFHSKSATVIAGGLTQRFCQQCSRFHLLTEFDNGKRSCRKRLADHNRRRRKTPQ 277 6**************************************************************************865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 6.9E-34 | 195 | 262 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 32.223 | 198 | 275 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 2.62E-38 | 199 | 277 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 1.5E-30 | 201 | 274 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 352 aa Download sequence Send to blast |
MLEYEPWGNP SQMILGSAED DPAQVVSDHH GIDIFNTNGN SSNGHHSALS LDYAQAAAAT 60 DPHHHHHQGV TFSSSPNLNA FSQHHHHHHQ FFNADHQAAS LNALYDPRAF PSSYAPQHHF 120 DAALTGLNPN SAHPGGAGYF LVPKTEEGAA AGRQQGTRIG LNLGHRTYFS AQDDDFVNRL 180 YRRSRPGGMD ACGGSVNAPR CQAEGCAADL SNAKHYHRRH KVCEFHSKSA TVIAGGLTQR 240 FCQQCSRFHL LTEFDNGKRS CRKRLADHNR RRRKTPQQPS GQGQLELQKS PMDNSSETLT 300 KSPPESSALT HPSSSVTIAI SPPRMTLECF RQRSYREMAS SSSSSSVFYS N* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 2e-29 | 194 | 274 | 4 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012083646.1 | 1e-97 | squamosa promoter-binding-like protein 8 | ||||
TrEMBL | A0A067JXX7 | 3e-96 | A0A067JXX7_JATCU; Uncharacterized protein | ||||
STRING | POPTR_0014s05680.1 | 2e-96 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G02065.1 | 5e-71 | squamosa promoter binding protein-like 8 |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0187s0023.1.p |