PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0186s0044.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family GRF
Protein Properties Length: 382aa    MW: 41865.1 Da    PI: 10.2023
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0186s0044.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC69.93.1e-22152193142
                  WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrks 42 
                          d+epgrCrRtDGKkWRCsr+v +g+k+C+rH++rgr+++++ 
  Kalax.0186s0044.1.p 152 DPEPGRCRRTDGKKWRCSRDVAPGHKYCDRHMNRGRMNRSRN 193
                          79*********************************9877654 PP
2QLQ49.99.8e-1878112337
                  QLQ   3 FTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 
                          F+ aQ+q+L+ Q+ +++y++a++ vP+eLlq+i++
  Kalax.0186s0044.1.p  78 FSSAQWQELELQAVIFRYMLAGASVPAELLQPIKN 112
                          9********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009512.8E-1076112IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166619.60677112IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088801.4E-1278110IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166724.45152198IPR014977WRC domain
PfamPF088797.6E-18153192IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    Send to blast
MDFKLMQWRD QQQQRKHQSN HQAVGKDRKQ DQQQEQQSLS ALSLFLTEPV SKVGIMSGLL  60
DTPSASKFSK MMMMGGQFSS AQWQELELQA VIFRYMLAGA SVPAELLQPI KNSLLNSSSF  120
FLHHPLQHYS NYQPAATVAL LQSGYWGRAG MDPEPGRCRR TDGKKWRCSR DVAPGHKYCD  180
RHMNRGRMNR SRNRSRKPVE LPKPRTNMTP TNYVNAGGGE LGNSVYPMKA PPLGVPSRAH  240
FGSIGGAAAA APSIDSLHLG RRSPFELDRT ESPHSGTSDG RVLRRFFDDW PRPMAESGAG  300
GTHIDLMGSS ASLSMSTQEN SASDVSLKLS TGSGSEEASA ERDRTQLNWM AQWGQHQAGP  360
MGGPLAEALR SSATPAAELA R*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002277233.31e-114PREDICTED: growth-regulating factor 3
TrEMBLF6HKI61e-112F6HKI6_VITVI; Uncharacterized protein
STRINGVIT_08s0007g03760.t011e-113(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G52910.12e-55growth-regulating factor 4