PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0186s0016.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family HD-ZIP
Protein Properties Length: 275aa    MW: 31645.5 Da    PI: 6.8973
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0186s0016.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.31.3e-1898151457
                          -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
             Homeobox   4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 
                          + ++++eql++Le+ F+++ +++ e++ +LA++lg++ rq+ vWFqNrRa++k+
  Kalax.0186s0016.1.p  98 KKRLNDEQLDALERNFREEIKLDPERKMRLARELGMQPRQIAVWFQNRRARWKN 151
                          45699***********************************************95 PP
2HD-ZIP_I/II115.82.5e-3797186291
          HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                          kk+rl++eq+ +LE++F+ee kL+perK++lareLg+qprq+avWFqnrRAR+k+kqlE+ y+aLk+++d +++e+ rL++ev +Lr  +
  Kalax.0186s0016.1.p  97 KKKRLNDEQLDALERNFREEIKLDPERKMRLARELGMQPRQIAVWFQNRRARWKNKQLERMYDALKQEFDVVSREKLRLQEEVMKLRGMV 186
                          9*************************************************************************************9766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.75E-1981154IPR009057Homeodomain-like
PROSITE profilePS5007116.98992152IPR001356Homeobox domain
SMARTSM003893.0E-1694156IPR001356Homeobox domain
CDDcd000861.19E-1697153No hitNo description
PfamPF000465.0E-1698151IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.605.7E-2099160IPR009057Homeodomain-like
PRINTSPR000313.2E-5123132IPR000047Helix-turn-helix motif
PROSITE patternPS000270127150IPR017970Homeobox, conserved site
PRINTSPR000313.2E-5132148IPR000047Helix-turn-helix motif
PfamPF021831.4E-7152186IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MEPWNNGGSN SIIRPPFLAA RPENNPLNFL YYYNYDDQHQ GCLEQAEAHP GMMMMEPVSP  60
HHVLISHHSM ENANNPHDDL MMSAKSGHSY GNVQDLKKKR LNDEQLDALE RNFREEIKLD  120
PERKMRLARE LGMQPRQIAV WFQNRRARWK NKQLERMYDA LKQEFDVVSR EKLRLQEEVM  180
KLRGMVRDRL AASAEDDGTG DRDNVLGPNK LQQPIMAGPI THQQQVHPQM AGGETTHFSA  240
GGANLGQDYT NSHHILTSNY WASTQQQQQL PHYP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1144152RRARWKNKQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011094442.11e-53putative homeobox-leucine zipper protein ATHB-51
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03790.18e-43homeobox 51