PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0186s0004.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | ERF | ||||||||
Protein Properties | Length: 168aa MW: 17957.9 Da PI: 9.1944 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 49.8 | 8.7e-16 | 28 | 76 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y GVr +k +g+WvAeIr+p++ r r++lg++ ta Aa+a++ a l+g Kalax.0186s0004.1.p 28 YNGVRMRK-WGKWVAEIREPRK---RSRIWLGTYKTAVAAARAHDVALFHLRG 76 78***999.**********954...5**********************99998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 21.957 | 27 | 84 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.6E-33 | 27 | 90 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.9E-29 | 27 | 85 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 7.81E-25 | 28 | 86 | No hit | No description |
SuperFamily | SSF54171 | 7.85E-20 | 28 | 85 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 3.0E-10 | 28 | 76 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.0E-9 | 28 | 39 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.0E-9 | 50 | 66 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 168 aa Download sequence Send to blast |
MEDNRSGGGR GSSQSRAVFG AGRAGREYNG VRMRKWGKWV AEIREPRKRS RIWLGTYKTA 60 VAAARAHDVA LFHLRGRSEK LNFPEHFAGR VSVEMSAEEI RRMATAVGAE VDADELGMRR 120 RKAADEPSRC GGAESGEGEG GGVGSARPDL NQLPDLDGSD GDVSGGE* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 1e-14 | 25 | 84 | 3 | 63 | ATERF1 |
3gcc_A | 1e-14 | 25 | 84 | 3 | 63 | ATERF1 |
5wx9_A | 1e-14 | 27 | 87 | 14 | 75 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010263467.1 | 3e-40 | PREDICTED: ethylene-responsive transcription factor ERF008-like | ||||
Swissprot | O22174 | 4e-36 | ERF08_ARATH; Ethylene-responsive transcription factor ERF008 | ||||
TrEMBL | A0A1U8A9R8 | 7e-39 | A0A1U8A9R8_NELNU; ethylene-responsive transcription factor ERF008-like | ||||
STRING | XP_010263467.1 | 1e-39 | (Nelumbo nucifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G50260.1 | 2e-29 | cooperatively regulated by ethylene and jasmonate 1 |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0186s0004.1.p |
Publications ? help Back to Top | |||
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