PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0185s0010.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

G2-like

Protein Properties

Length: 306aa MW: 33229.7 Da PI: 7.5016

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0185s0010.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	108.3	4.1e-34	40	94	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt eLH+rFv+av+qLGG++kAtPkti+++m+vkgLtl+h+kSHLQkYRl Kalax.0185s0010.1.p 40 KPRLRWTAELHDRFVDAVAQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYRL 94 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	12.926	37	97	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	8.2E-33	37	95	IPR009057	Homeodomain-like
SuperFamily	SSF46689	4.12E-17	40	95	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.6E-24	40	95	IPR006447	Myb domain, plants
Pfam	PF00249	4.1E-9	42	93	IPR001005	SANT/Myb domain
Pfam	PF14379	1.1E-25	138	184	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010628	Biological Process	positive regulation of gene expression
GO:0016036	Biological Process	cellular response to phosphate starvation
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 306 aa Download sequence Send to blast
MYSAIHSLPL DGSSEYHQIS SLDGTNLPGD ACLVMTSDPK PRLRWTAELH DRFVDAVAQL 60 GGPDKATPKT IMRTMGVKGL TLYHLKSHLQ KYRLGKQAGK ESTENSKEAS CMAENQDTGS 120 SASPSSRVIA QEINDSYQVT EALRVQMEVQ RRLHEQLEVK RRLQLRIEAQ GKYLQAILEK 180 ACKALNDQAV AAAGLEAARE ELSELAIKVS HDTQELAPLD NIKMPSLSDI TAAFESNSKP 240 VPNFPARLGD CSIDSCLTST GSPSSPVGLS AQNAAMKKRP RPVFSSCESF PFKNMQGVGW 300 MPNSG*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	9e-19	40	96	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	9e-19	40	96	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	9e-19	40	96	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	9e-19	40	96	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	9e-19	40	96	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	9e-19	40	96	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	9e-19	40	96	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	9e-19	40	96	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	9e-19	40	96	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	9e-19	40	96	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	9e-19	40	96	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	9e-19	40	96	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
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Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	277	281	KRPRP

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator (PubMed:26586833). Acts redundantly with PHR1 as a key component of the central regulatory system controlling transcriptional responses to Pi starvation (PubMed:26586833). Binds in a sequence-specific manner to phosphate starvation-regulated promoters (PubMed:26586833). {ECO:0000269\|PubMed:26586833}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00378	DAP	Transfer from AT3G24120	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in roots by low Pi. {ECO:0000269\|PubMed:26586833}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006369801.1	1e-165	protein PHR1-LIKE 3
Swissprot	Q94A57	1e-130	PHL2_ARATH; Protein PHR1-LIKE 2
TrEMBL	U5GS23	1e-164	U5GS23_POPTR; Uncharacterized protein
STRING	XP_006493809.1	1e-164	(Citrus sinensis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24120.1	1e-119	G2-like family protein

Link Out ? help Back to Top
Phytozome	Kalax.0185s0010.1.p

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]