PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0184s0041.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family AP2
Protein Properties Length: 413aa    MW: 45882.4 Da    PI: 9.4107
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0184s0041.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.23.7e-1763122155
                  AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                          s y+GV++++++gr++A+++d  ++n+   k+ k+++lg ++ +e Aa+a++ a++k++g
  Kalax.0184s0041.1.p  63 SIYRGVTRHRWTGRYEAHLWDkSTWNQnqnKKgKQVYLGAYDDEEAAARAYDLAALKYWG 122
                          57*******************766644468557*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.42E-1763132IPR016177DNA-binding domain
PfamPF008476.1E-1363122IPR001471AP2/ERF domain
PROSITE profilePS5103220.12664130IPR001471AP2/ERF domain
SMARTSM003801.0E-2564136IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-1564131IPR001471AP2/ERF domain
PRINTSPR003673.2E-56576IPR001471AP2/ERF domain
PRINTSPR003673.2E-5112132IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 413 aa     Download sequence    Send to blast
MDASCSKMGG EGGGGMDASD AVAAANSQLL LYKGLKKAKK ERGSTAKERI SKMPPCAAGK  60
RSSIYRGVTR HRWTGRYEAH LWDKSTWNQN QNKKGKQVYL GAYDDEEAAA RAYDLAALKY  120
WGPGTLINFP VSDYTRDLEE MQTVSREEYL ASLRRKSSGF SRGMSKYRGL SSRWDPSFGR  180
APEYLKNMPY GTGNEATTNN ESVSGFRTES KIDLTNYIKW WGPGRDRPTD CISRLSDETK  240
PCVDDFSSEL KTLESAKPTE PYQMPQLGVS HERGKYKHFS NSAMSTIFRS AAYKKLLEKV  300
SKQKETSMET ENKSNITKIN HGKEIEKRSG PELENETVTV APAIGDGSSL QRILYPFGQV  360
LPAPVPTSYN VNPTDSSLWQ SLVQTPSIGL PLASEVTKAE TSSTYAFFQQ HE*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004493481.11e-170AP2-like ethylene-responsive transcription factor At2g41710 isoform X1
SwissprotQ8GWK21e-131AP2L4_ARATH; AP2-like ethylene-responsive transcription factor At2g41710
TrEMBLA0A1S2XTQ71e-169A0A1S2XTQ7_CICAR; AP2-like ethylene-responsive transcription factor At2g41710 isoform X1
STRINGXP_004493481.11e-170(Cicer arietinum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41710.11e-120AP2 family protein