PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0182s0087.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | AP2 | ||||||||
Protein Properties | Length: 570aa MW: 61359.9 Da PI: 6.6092 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 33 | 1.5e-10 | 189 | 245 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d + ++ k + g ++ +++Aa+a++ a++k++g Kalax.0182s0087.1.p 189 SIYRGVTRHRWTGRYEAHLWDnSCR-RegQSrKGRQ-GGYDKEDKAARAYDMAALKYWG 245 57*******************5444.2455535555.7799999*************98 PP | |||||||
2 | AP2 | 38.7 | 2.5e-12 | 275 | 322 | 5 | 55 |
AP2 5 GVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +r++++ grW A+I + +k +lg+f t+eeAa+a++ a+ k++g Kalax.0182s0087.1.p 275 SIRRHHQHGRWQARIGRVAG---NKDLYLGTFSTEEEAAEAYDIAAIKFRG 322 589***********988532...5************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 3.27E-14 | 189 | 255 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 8.1E-8 | 189 | 245 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.33E-18 | 189 | 255 | No hit | No description |
PROSITE profile | PS51032 | 17.148 | 190 | 253 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 5.1E-22 | 190 | 259 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.2E-11 | 190 | 254 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.9E-6 | 191 | 202 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 16.674 | 269 | 330 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 4.8E-7 | 275 | 322 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.06E-20 | 276 | 330 | No hit | No description |
SMART | SM00380 | 7.0E-27 | 276 | 336 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 6.47E-15 | 278 | 331 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 2.9E-15 | 278 | 330 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.9E-6 | 312 | 332 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 570 aa Download sequence Send to blast |
MNTNNWLSFP LSPSNPAHMS SHTSQEGHHF SLGLINHNLD TSFQTHEWNL MDTQHGESDC 60 PKVVADFMGV GKSSSHHHSD LTTYNQLHHQ TTSTEPDYLY LNNTSLYGIQ NAVPLSTVTA 120 NSSFEYQDNA NSLESLTLSM GSNNSSKRST CETSTVGENS NANSTATAAI VEAAPAARRT 180 LDSFGQRTSI YRGVTRHRWT GRYEAHLWDN SCRREGQSRK GRQGGYDKED KAARAYDMAA 240 LKYWGTSTTT NFPISNYEKE LEDMKNMTRQ EFVASIRRHH QHGRWQARIG RVAGNKDLYL 300 GTFSTEEEAA EAYDIAAIKF RGLNAVTNFD MNRYDVKSIL ESNTLPIGGG AAKRLKEAQA 360 IETSRKREEM LALGCSSSTF HYNPSGVGRL APAAPSSYPL MHDYQFEHSG NNLVGLQNQD 420 VLSHQLAQDS GSYSYLQTQL QLQQQGAQGG SYPHLYNGYL HSNNPGFIHG LIGMGGGGSS 480 GGSLSLDHSN NVGYNLGNNV GSSGGGGGLG LGSDVGAGSG RLDLGMVKVD YDMAAQGGGG 540 GGYGGGGWNA EGAGASNGNN GGVFAMWND* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Master regulator of basal/root fate. Essential for root quiescent center (QC) and columella specification, stem cell activity, as well as for establishment of the stem cell niche during embryogenesis. Modulates the root polar auxin transport by regulating the distribution of PIN genes. Essential role in respecifying pattern and polarity in damaged roots. Direct target of the transcriptional corepressor TPL. Expression levels and patterns regulated post-transcriptionally by root meristem growth factors (RGFs). {ECO:0000250, ECO:0000269|PubMed:15454085, ECO:0000269|PubMed:15635403, ECO:0000269|PubMed:16424342, ECO:0000269|PubMed:20190735}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin accumulation. {ECO:0000269|PubMed:15454085}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017982598.1 | 0.0 | PREDICTED: AP2-like ethylene-responsive transcription factor PLT2 | ||||
Swissprot | Q5YGP7 | 0.0 | PLET2_ARATH; AP2-like ethylene-responsive transcription factor PLT2 | ||||
TrEMBL | A0A061GZ62 | 0.0 | A0A061GZ62_THECC; AP2 domain-containing transcription factor | ||||
STRING | EOY32584 | 0.0 | (Theobroma cacao) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G51190.1 | 1e-155 | AP2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0182s0087.1.p |