PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0182s0064.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family GRAS
Protein Properties Length: 454aa    MW: 50862.6 Da    PI: 6.1979
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0182s0064.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS452.72.3e-138474501374
                 GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPi 90 
                          l++lLl+cA++v++g+le a+ +L ++s++aspdgd+mqR+a+yft ALa+r+++s+++ly+al++++       ee+ ++klf e++P+
  Kalax.0182s0064.1.p  47 LIHLLLTCANHVANGSLESANVALDHISQIASPDGDTMQRIASYFTDALANRILKSWPGLYRALNSTRML--MAHEEILVQKLFLELFPF 134
                          689*************************************************************988886..59999************* PP

                 GRAS  91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnv 180
                          lk+ + +aNqaI+ea+ege+++H+iD+   +++QW+aLlqaL+ Rpegpp+lRiTg+++    +k  l ++++rL+  Ae+l++pf+fn+
  Kalax.0182s0064.1.p 135 LKIVYTVANQAIMEAMEGEKMIHVIDLCSAEPAQWVALLQALSVRPEGPPHLRITGIHQ----QKAVLDQMAQRLNAEAERLDIPFQFNP 220
                          ***********************************************************....9************************** PP

                 GRAS 181 lvakrledleleeLrvkpgEalaVnlvlqlhrll.....................................desvsleserdevLklvks 233
                           v+++le+l++++Lrvk+gEala++++lqlh+ll                                      +s +l+s+ d++L  +++
  Kalax.0182s0064.1.p 221 -VVSNLECLDFDRLRVKTGEALAISSILQLHKLLswddetvrlrlpdkppnynhgtfgellekdagispdsTSSSPLSSKMDSFLMELRN 309
                          .799*****************************************************************99888889999********** PP

                 GRAS 234 lsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaG 323
                          l Pkv+vv+eq+++hn++s++er++eal+yy+alfd+le++++r+s er k+E+ l+g+ei+n++aceg++r+erhe+l +W +rl++aG
  Kalax.0182s0064.1.p 310 LLPKVMVVAEQDSNHNGSSLMERLTEALYYYAALFDCLESTVSRASLERLKIEKILFGEEIKNIIACEGRDRKERHEKLCEWVRRLGAAG 399
                          ****************************************************************************************** PP

                 GRAS 324 FkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                          F++vpls  a+  a++ll+ ++ dgy++++e+gs+vl+W+dr+L+svSaWr
  Kalax.0182s0064.1.p 400 FGAVPLSCLAMLLARRLLQGYGCDGYQIKDENGSIVLCWQDRALFSVSAWR 450
                          **************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098558.04921430IPR005202Transcription factor GRAS
PfamPF035147.8E-13647450IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 454 aa     Download sequence    Send to blast
MAPTFQEDGS SSVTSSPLHF FSMMSLSPGS AHPWLKELKS EERGLYLIHL LLTCANHVAN  60
GSLESANVAL DHISQIASPD GDTMQRIASY FTDALANRIL KSWPGLYRAL NSTRMLMAHE  120
EILVQKLFLE LFPFLKIVYT VANQAIMEAM EGEKMIHVID LCSAEPAQWV ALLQALSVRP  180
EGPPHLRITG IHQQKAVLDQ MAQRLNAEAE RLDIPFQFNP VVSNLECLDF DRLRVKTGEA  240
LAISSILQLH KLLSWDDETV RLRLPDKPPN YNHGTFGELL EKDAGISPDS TSSSPLSSKM  300
DSFLMELRNL LPKVMVVAEQ DSNHNGSSLM ERLTEALYYY AALFDCLEST VSRASLERLK  360
IEKILFGEEI KNIIACEGRD RKERHEKLCE WVRRLGAAGF GAVPLSCLAM LLARRLLQGY  420
GCDGYQIKDE NGSIVLCWQD RALFSVSAWR CRR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A6e-68354526380Protein SCARECROW
5b3h_D6e-68354526380Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023924242.10.0scarecrow-like protein 3
SwissprotQ9LPR80.0SCL3_ARATH; Scarecrow-like protein 3
TrEMBLA0A2N9J6M90.0A0A2N9J6M9_FAGSY; Uncharacterized protein
STRINGevm.model.supercontig_84.120.0(Carica papaya)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.10.0scarecrow-like 3
Publications ? help Back to Top
  1. Gong X, et al.
    SEUSS Integrates Gibberellin Signaling with Transcriptional Inputs from the SHR-SCR-SCL3 Module to Regulate Middle Cortex Formation in the Arabidopsis Root.
    Plant Physiol., 2016. 170(3): p. 1675-83
    [PMID:26818732]
  2. Lee SA, et al.
    Interplay between ABA and GA Modulates the Timing of Asymmetric Cell Divisions in the Arabidopsis Root Ground Tissue.
    Mol Plant, 2016. 9(6): p. 870-84
    [PMID:26970019]
  3. Choi JW,Lim J
    Control of Asymmetric Cell Divisions during Root Ground Tissue Maturation.
    Mol. Cells, 2016. 39(7): p. 524-9
    [PMID:27306644]