PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0179s0071.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family TALE
Protein Properties Length: 356aa    MW: 39368.9 Da    PI: 6.9099
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0179s0071.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.92e-092833172155
                          HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
             Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                          k +yps++++  LA+++gL+++q+ +WF N+R ++
  Kalax.0179s0071.1.p 283 KWPYPSESQKLALAESTGLDQKQINNWFINQRKRH 317
                          569*****************************885 PP
2ELK41.13.6e-14237258122
                  ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                          ELK qLlrKYsgyLgsLkqEF+
  Kalax.0179s0071.1.p 237 ELKGQLLRKYSGYLGSLKQEFM 258
                          9********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012551.1E-20100144IPR005540KNOX1
PfamPF037902.2E-21101140IPR005540KNOX1
SMARTSM012562.7E-24148199IPR005541KNOX2
PfamPF037915.9E-21152198IPR005541KNOX2
SMARTSM011882.8E-8237258IPR005539ELK domain
PfamPF037895.9E-11237258IPR005539ELK domain
PROSITE profilePS5121311.174237257IPR005539ELK domain
PROSITE profilePS5007113.086257320IPR001356Homeobox domain
SuperFamilySSF466891.41E-19259334IPR009057Homeodomain-like
SMARTSM003891.2E-12259324IPR001356Homeobox domain
CDDcd000862.93E-14260321No hitNo description
Gene3DG3DSA:1.10.10.608.4E-28262322IPR009057Homeodomain-like
PfamPF059208.5E-17277316IPR008422Homeobox KN domain
PROSITE patternPS000270295318IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MEGDCDGGGG VGFGGNNLSS SGNIGGLMMM MPPPPRSSTL TTNNSSSSPN PNHNRPFFFP  60
PTSSSNPNHH SSRDNYFMDA DVGGSSSNTT NTTNRSSSEA ALKAKIMSHP HYHRLVAAYV  120
NCQKVGAPPE VVEKLERACA GLSTITTGSG RLGEDPGLDQ FMEAYCEMLT KYELELSKPF  180
KEAMAFLSRI ESQFKALTLS SSSDSPAYGQ SSDGNGSSDE DVGVHNDLID PQAEDRELKG  240
QLLRKYSGYL GSLKQEFMKR RKKGKLPKEA RQQLLDWWTR HYKWPYPSES QKLALAESTG  300
LDQKQINNWF INQRKRHWKP SEDMQFVVMD AAHPHYYMDN AMGNPYPMDI SPGYL*
Functional Description ? help Back to Top
Source Description
UniProtPossible transcription activator involved in early embryonic development. Probably binds to the DNA sequence 5'-TGAC-3'.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ6742680.0DQ674268.1 Kalanchoe daigremontiana STM protein (STM) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021889118.11e-151homeobox protein SBH1
SwissprotP466081e-139HSBH1_SOYBN; Homeobox protein SBH1
TrEMBLA5X9E90.0A5X9E9_KALDA; STM protein (Fragment)
STRINGXP_002518420.11e-148(Ricinus communis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62360.11e-131KNOX/ELK homeobox transcription factor
Publications ? help Back to Top
  1. Shu Y, et al.
    GmSBH1, a homeobox transcription factor gene, relates to growth and development and involves in response to high temperature and humidity stress in soybean.
    Plant Cell Rep., 2015. 34(11): p. 1927-37
    [PMID:26205508]