PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0178s0064.2.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family GRF
Protein Properties Length: 277aa    MW: 31420.9 Da    PI: 9.8951
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0178s0064.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC81.29.3e-26154197144
                  WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 
                          d+epgrCrRtDGKkWRCsr+v +g+k+CErH++rgr+rsrk++e
  Kalax.0178s0064.2.p 154 DPEPGRCRRTDGKKWRCSRDVAPGHKYCERHMNRGRNRSRKPVE 197
                          79***************************************987 PP
2QLQ49.41.4e-1780113336
                  QLQ   3 FTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36 
                          F+ aQ+q+L+ Q+ +++y++a++ vP+eLlq+i+
  Kalax.0178s0064.2.p  80 FSSAQWQELELQAVIFRYMLAGASVPAELLQPIK 113
                          9********************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009512.8E-1078114IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166619.2679114IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088808.8E-1380112IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.494154198IPR014977WRC domain
PfamPF088791.3E-21155197IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MDFQLMQWRE HQQQSEHQQK QQGEVVGIDR KQDQHQQQQQ SLSALPLFLT EPVSKVGNMS  60
VLPDMPSTSK FPKMMMNGQF SSAQWQELEL QAVIFRYMLA GASVPAELLQ PIKSSLLNSS  120
SFFLHHPLQH FSHYQPATAA ALLQSGYWGR AGMDPEPGRC RRTDGKKWRC SRDVAPGHKY  180
CERHMNRGRN RSRKPVEIPK PRTMAPPNCH NTGGGELWKT ANPMMASPLG EASRARFSSF  240
GTAAPSVDML QLNQRYITAC WYCLKDVNWK PALYSF*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that plays a role in the regulation of cell expansion in leaf and cotyledons tissues. Component of a network formed by miR396, the GRFs and their interacting factors (GIFs) acting in the regulation of meristem function, at least partially through the control of cell proliferation. microRNA396-GRF1/GRF3 regulatory module acts as a developmental regulator in the reprogramming of root cells during cyst nematode infection, leading to the formation of the syncytium. {ECO:0000269|PubMed:12974814, ECO:0000269|PubMed:22419826}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: microRNA 396 (miR396a or miR396b) negatively regulates growth-regulating factors (GRF1-4 and GRF7-9). Up-regulated in response to cyst nematode infection. {ECO:0000269|PubMed:15200956, ECO:0000269|PubMed:19453503, ECO:0000269|PubMed:20023165, ECO:0000269|PubMed:22419826}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024955418.13e-86growth-regulating factor 3 isoform X1
SwissprotQ9SJR54e-62GRF3_ARATH; Growth-regulating factor 3
TrEMBLV4SS153e-84V4SS15_9ROSI; Uncharacterized protein
STRINGXP_006481829.11e-85(Citrus sinensis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36400.13e-55growth-regulating factor 3
Publications ? help Back to Top
  1. Casadevall R,Rodriguez RE,Debernardi JM,Palatnik JF,Casati P
    Repression of growth regulating factors by the microRNA396 inhibits cell proliferation by UV-B radiation in Arabidopsis leaves.
    Plant Cell, 2013. 25(9): p. 3570-83
    [PMID:24076976]
  2. Vercruyssen L, et al.
    ANGUSTIFOLIA3 binds to SWI/SNF chromatin remodeling complexes to regulate transcription during Arabidopsis leaf development.
    Plant Cell, 2014. 26(1): p. 210-29
    [PMID:24443518]
  3. Liu J,Rice JH,Chen N,Baum TJ,Hewezi T
    Synchronization of developmental processes and defense signaling by growth regulating transcription factors.
    PLoS ONE, 2014. 9(5): p. e98477
    [PMID:24875638]
  4. Cao Y,Han Y,Jin Q,Lin Y,Cai Y
    Comparative Genomic Analysis of the GRF Genes in Chinese Pear (Pyrus bretschneideri Rehd), Poplar (Populous), Grape (Vitis vinifera), Arabidopsis and Rice (Oryza sativa).
    Front Plant Sci, 2016. 7: p. 1750
    [PMID:27933074]