PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0178s0064.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | GRF | ||||||||
Protein Properties | Length: 390aa MW: 43031.6 Da PI: 9.7223 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 80.5 | 1.5e-25 | 154 | 197 | 1 | 44 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 d+epgrCrRtDGKkWRCsr+v +g+k+CErH++rgr+rsrk++e Kalax.0178s0064.1.p 154 DPEPGRCRRTDGKKWRCSRDVAPGHKYCERHMNRGRNRSRKPVE 197 79***************************************987 PP | |||||||
2 | QLQ | 48.8 | 2.2e-17 | 80 | 113 | 3 | 36 |
QLQ 3 FTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36 F+ aQ+q+L+ Q+ +++y++a++ vP+eLlq+i+ Kalax.0178s0064.1.p 80 FSSAQWQELELQAVIFRYMLAGASVPAELLQPIK 113 9********************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 2.8E-10 | 78 | 114 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 19.26 | 79 | 114 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 1.4E-12 | 80 | 112 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 25.494 | 154 | 198 | IPR014977 | WRC domain |
Pfam | PF08879 | 2.1E-21 | 155 | 197 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 390 aa Download sequence Send to blast |
MDFQLMQWRE HQQQSEHQQK QQGEVVGIDR KQDQHQQQQQ SLSALPLFLT EPVSKVGNMS 60 VLPDMPSTSK FPKMMMNGQF SSAQWQELEL QAVIFRYMLA GASVPAELLQ PIKSSLLNSS 120 SFFLHHPLQH FSHYQPATAA ALLQSGYWGR AGMDPEPGRC RRTDGKKWRC SRDVAPGHKY 180 CERHMNRGRN RSRKPVEIPK PRTMAPPNCH NTGGGELWKT ANPMMASPLG EASRARFSSF 240 GTAAPSVDML QLNQRSSNLL PISKSELNQT ESLHSSTSDG RVLRRFFDDW PRPMAESGPG 300 GIHANPMMSS TSLSMSLPGN TASDVSLKLA TGSGSEDASA VERDRMQLSW MAQWGQHQAG 360 PMGGPLAEAL RSSVTTTASP TSVLHELAR* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018810585.1 | 1e-123 | PREDICTED: growth-regulating factor 3-like isoform X1 | ||||
TrEMBL | A0A2I4DTW3 | 1e-121 | A0A2I4DTW3_JUGRE; growth-regulating factor 3-like isoform X1 | ||||
STRING | VIT_08s0007g03760.t01 | 1e-119 | (Vitis vinifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G52910.1 | 6e-65 | growth-regulating factor 4 |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0178s0064.1.p |