PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0178s0064.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family GRF
Protein Properties Length: 390aa    MW: 43031.6 Da    PI: 9.7223
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0178s0064.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC80.51.5e-25154197144
                  WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 
                          d+epgrCrRtDGKkWRCsr+v +g+k+CErH++rgr+rsrk++e
  Kalax.0178s0064.1.p 154 DPEPGRCRRTDGKKWRCSRDVAPGHKYCERHMNRGRNRSRKPVE 197
                          79***************************************987 PP
2QLQ48.82.2e-1780113336
                  QLQ   3 FTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36 
                          F+ aQ+q+L+ Q+ +++y++a++ vP+eLlq+i+
  Kalax.0178s0064.1.p  80 FSSAQWQELELQAVIFRYMLAGASVPAELLQPIK 113
                          9********************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009512.8E-1078114IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166619.2679114IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088801.4E-1280112IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.494154198IPR014977WRC domain
PfamPF088792.1E-21155197IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 390 aa     Download sequence    Send to blast
MDFQLMQWRE HQQQSEHQQK QQGEVVGIDR KQDQHQQQQQ SLSALPLFLT EPVSKVGNMS  60
VLPDMPSTSK FPKMMMNGQF SSAQWQELEL QAVIFRYMLA GASVPAELLQ PIKSSLLNSS  120
SFFLHHPLQH FSHYQPATAA ALLQSGYWGR AGMDPEPGRC RRTDGKKWRC SRDVAPGHKY  180
CERHMNRGRN RSRKPVEIPK PRTMAPPNCH NTGGGELWKT ANPMMASPLG EASRARFSSF  240
GTAAPSVDML QLNQRSSNLL PISKSELNQT ESLHSSTSDG RVLRRFFDDW PRPMAESGPG  300
GIHANPMMSS TSLSMSLPGN TASDVSLKLA TGSGSEDASA VERDRMQLSW MAQWGQHQAG  360
PMGGPLAEAL RSSVTTTASP TSVLHELAR*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018810585.11e-123PREDICTED: growth-regulating factor 3-like isoform X1
TrEMBLA0A2I4DTW31e-121A0A2I4DTW3_JUGRE; growth-regulating factor 3-like isoform X1
STRINGVIT_08s0007g03760.t011e-119(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G52910.16e-65growth-regulating factor 4