PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0177s0072.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

MYB_related

Protein Properties

Length: 681aa MW: 75881 Da PI: 6.9256

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0177s0072.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	31.4	4.3e-10	631	677	3	46
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqk 46 rW+ E++ l +v+++G+g+Wk I t + Rt+ ++k++w+ Kalax.0177s0072.1.p 631 RWSLLEEDTLRAGVQRFGKGNWKMILVTYRdifEERTDVDLKDKWRR 677 9********************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	9.997	624	680	IPR017930	Myb domain
CDD	cd11660	1.61E-16	630	680	No hit	No description
SuperFamily	SSF46689	2.85E-12	631	679	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.3E-9	631	679	IPR009057	Homeodomain-like
Pfam	PF00249	8.4E-6	631	677	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 681 aa Download sequence Send to blast
MGSGGIVDKW LAEFAIRNAK DDKLVAKTLS LVPRLRDDAG LKKIVLLRGI ESEMDEGSVS 60 ERMLDALEVA FELDRRQGLD ALESMKAAYC SVAVDCVARF VKSVGGGDVY LKAVKRVWRR 120 RIGPLIAHNV DLVSEQLESW RDTVESAIWD GNVRDKLFVT NTRYEALVAI KGYLDEAWKI 180 VGPSFLEMLA SSELGKSLVK AQQQLCLASI SEPSEGEPQR PFDMPGIFNH NAQYGGMVLS 240 VSSNLVSSPL LKNNDQKHVA KTLTRNLGDN SKSPADIIHK EVSEASFCAH TVNRHLDENM 300 RLADCGIAEE KNLLQSSSGL ARDQSDNVEL VHVKSKVAED ATLPLPGVCA TNSFVYDDHL 360 KGADTDFVNE SKADLRSSPA QGNLQSLNNS KAHYKDTRKL GVRSKHVGRP NKRSKPVRVN 420 NSEDWDLEGL DTQYHPLPET EVIKVREELK FSSRELQAAV KDPLPDALRV AEAVISDVSR 480 NCIPQGAPAA SITDRETPNF QDVEVDRGRD RASTSHSAEV RTSNTEGNTM NLRTNKSYEK 540 DARDAAGNAS PPETVGDGDN NVQNEGSRHG NRRQRANLWE RDASARTYEW DDSIDGSQEE 600 NYGLPTPKTH VNPPRKNNGS VKYARRRHIK RWSLLEEDTL RAGVQRFGKG NWKMILVTYR 660 DIFEERTDVD LKDKWRRMTK *

Sequence ? help Back to Top

Protein Sequence Length: 681 aa Download sequence Send to blast

MGSGGIVDKW LAEFAIRNAK DDKLVAKTLS LVPRLRDDAG LKKIVLLRGI ESEMDEGSVS  60
ERMLDALEVA FELDRRQGLD ALESMKAAYC SVAVDCVARF VKSVGGGDVY LKAVKRVWRR  120
RIGPLIAHNV DLVSEQLESW RDTVESAIWD GNVRDKLFVT NTRYEALVAI KGYLDEAWKI  180
VGPSFLEMLA SSELGKSLVK AQQQLCLASI SEPSEGEPQR PFDMPGIFNH NAQYGGMVLS  240
VSSNLVSSPL LKNNDQKHVA KTLTRNLGDN SKSPADIIHK EVSEASFCAH TVNRHLDENM  300
RLADCGIAEE KNLLQSSSGL ARDQSDNVEL VHVKSKVAED ATLPLPGVCA TNSFVYDDHL  360
KGADTDFVNE SKADLRSSPA QGNLQSLNNS KAHYKDTRKL GVRSKHVGRP NKRSKPVRVN  420
NSEDWDLEGL DTQYHPLPET EVIKVREELK FSSRELQAAV KDPLPDALRV AEAVISDVSR  480
NCIPQGAPAA SITDRETPNF QDVEVDRGRD RASTSHSAEV RTSNTEGNTM NLRTNKSYEK  540
DARDAAGNAS PPETVGDGDN NVQNEGSRHG NRRQRANLWE RDASARTYEW DDSIDGSQEE  600
NYGLPTPKTH VNPPRKNNGS VKYARRRHIK RWSLLEEDTL RAGVQRFGKG NWKMILVTYR  660
DIFEERTDVD LKDKWRRMTK *

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G15720.1	3e-23	TRF-like 5

Link Out ? help Back to Top
Phytozome	Kalax.0177s0072.1.p