PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0177s0061.4.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family CO-like
Protein Properties Length: 396aa    MW: 43808.8 Da    PI: 5.8316
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0177s0061.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box20.41.1e-064689441
             zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg.......Htvvp 41
                          +C++++ +++ l C + ++ lC++C  ++H g       H++++
  Kalax.0177s0061.4.p 46 LVCQRCHAQPAALQCIEERVSLCQSCDWTGH-GasttgaaHKRRN 89
                         68*****************************.5588888888765 PP
2CCT58.23e-20338381144
                  CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                          R +a+lRYkeK+k RkFeK++rY sRK++A+ R+RvKGrFvk+ 
  Kalax.0177s0061.4.p 338 RSKAVLRYKEKKKMRKFEKTVRYVSRKERADIRKRVKGRFVKAG 381
                          889**************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501198.887147IPR000315B-box-type zinc finger
CDDcd000211.88E-7447No hitNo description
SMARTSM003369.9E-7447IPR000315B-box-type zinc finger
PROSITE profilePS501198.8164390IPR000315B-box-type zinc finger
CDDcd000210.005384776No hitNo description
SMARTSM003362.44890IPR000315B-box-type zinc finger
PROSITE profilePS5101714.684338380IPR010402CCT domain
PfamPF062034.7E-15338380IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 396 aa     Download sequence    Send to blast
MGYKCDFCCN RSSVVYCRSD DACLCLDCDT SVHAANSLSR RHSRTLVCQR CHAQPAALQC  60
IEERVSLCQS CDWTGHGAST TGAAHKRRNI KFYSDCPSAA ELQSMWSYDS ESVSVSGSIS  120
IGEHEMGLMS IADGNVKQAK PSTTEVDQLC NVNPDQVWNS SAQDLDSSFS NASHETEIVN  180
TPQPKLSFLE AINPTGDDDL FVDFDMDESE LNLENYEELF RVNLSQSEEL LENGGIDSLF  240
EPRNKSLTEL NCHRTLASQK VASAAQPGCS KALSVDSMMT SKTEPVIHFK QRQSSSTLSF  300
SGDGGGDFID CGTSSMISLG EHPWCPSFQE SPSPSTNRSK AVLRYKEKKK MRKFEKTVRY  360
VSRKERADIR KRVKGRFVKA GETYDYDPLS QTKSC*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004303586.11e-143PREDICTED: zinc finger protein CONSTANS-LIKE 9
SwissprotQ9SSE51e-112COL9_ARATH; Zinc finger protein CONSTANS-LIKE 9
TrEMBLA0A2P5B6171e-141A0A2P5B617_PARAD; Zinc finger-domain containing protein
STRINGXP_004303586.11e-143(Fragaria vesca)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48250.14e-80B-box type zinc finger protein with CCT domain