PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0177s0061.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | CO-like | ||||||||
Protein Properties | Length: 519aa MW: 58066.6 Da PI: 8.2269 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 19.9 | 1.6e-06 | 169 | 212 | 4 | 41 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg.......Htvvp 41 +C++++ +++ l C + ++ lC++C ++H g H++++ Kalax.0177s0061.1.p 169 LVCQRCHAQPAALQCIEERVSLCQSCDWTGH-GasttgaaHKRRN 212 68*****************************.5588888888765 PP | |||||||
2 | CCT | 57.7 | 4.3e-20 | 461 | 504 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 R +a+lRYkeK+k RkFeK++rY sRK++A+ R+RvKGrFvk+ Kalax.0177s0061.1.p 461 RSKAVLRYKEKKKMRKFEKTVRYVSRKERADIRKRVKGRFVKAG 504 889**************************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00336 | 3.4E-9 | 123 | 170 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.34E-7 | 127 | 170 | No hit | No description |
PROSITE profile | PS50119 | 8.873 | 128 | 170 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 8.816 | 166 | 213 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 0.00478 | 170 | 211 | No hit | No description |
SMART | SM00336 | 2.4 | 171 | 213 | IPR000315 | B-box-type zinc finger |
Pfam | PF06203 | 6.7E-15 | 461 | 503 | IPR010402 | CCT domain |
PROSITE profile | PS51017 | 14.684 | 461 | 503 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 519 aa Download sequence Send to blast |
MRSMNVPPLF FLYFSFIFIS ISISIRARCL FLALFLSRFS FLSRASVFTS AKSDPNPFTP 60 QRRVKRFFRK APPFSARRAS TSYITQSEAK DARRLPYLPF CQTRIAFIFF KKCSSGRDSV 120 ISIMGYKCDF CCNRSSVVYC RSDDACLCLD CDTSVHAANS LSRRHSRTLV CQRCHAQPAA 180 LQCIEERVSL CQSCDWTGHG ASTTGAAHKR RNIKFYSDCP SAAELQSMWS YDSESVSVSG 240 SISIGEHEMG LMSIADGNVK QAKPSTTEVD QLCNVNPDQV WNSSAQDLDS SFSNASHETE 300 IVNTPQPKLS FLEAINPTGD DDLFVDFDMD ESELNLENYE ELFRVNLSQS EELLENGGID 360 SLFEPRNKSL TELNCHRTLA SQKVASAAQP GCSKALSVDS MMTSKTEPVI HFKQRQSSST 420 LSFSGDGGGD FIDCGTSSMI SLGEHPWCPS FQESPSPSTN RSKAVLRYKE KKKMRKFEKT 480 VRYVSRKERA DIRKRVKGRF VKAGETYDYD PLSQTKSC* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004303586.1 | 1e-142 | PREDICTED: zinc finger protein CONSTANS-LIKE 9 | ||||
Swissprot | Q9SSE5 | 1e-110 | COL9_ARATH; Zinc finger protein CONSTANS-LIKE 9 | ||||
TrEMBL | A0A2P5B617 | 1e-139 | A0A2P5B617_PARAD; Zinc finger-domain containing protein | ||||
STRING | XP_004303586.1 | 1e-141 | (Fragaria vesca) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G48250.1 | 7e-79 | B-box type zinc finger protein with CCT domain |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0177s0061.1.p |