PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0177s0038.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB
Protein Properties Length: 316aa    MW: 35324.8 Da    PI: 7.5369
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0177s0038.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.22.1e-141462148
                         TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                         +g+W +eEd  l  +++ +G+g +W + ++++g++R++k+c++rw++yl
  Kalax.0177s0038.1.p 14 KGPWAPEEDAMLRAYIHAHGTGgNWIALPQKIGLKRCGKSCRLRWLNYL 62
                         79*********************************************97 PP
2Myb_DNA-binding37.55.5e-1270111346
                          SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                           ++ eEd ++  +    G++ W+ Ia+ ++ gRt++++k++w++
  Kalax.0177s0038.1.p  70 GFSDEEDNIICSLYISIGSR-WSVIAAQLP-GRTDNDIKNYWNT 111
                          699*****************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.704962IPR017930Myb domain
SuperFamilySSF466891.72E-2413109IPR009057Homeodomain-like
SMARTSM007171.0E-101364IPR001005SANT/Myb domain
PfamPF002491.7E-131462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.6E-231569IPR009057Homeodomain-like
CDDcd001673.15E-71662No hitNo description
PROSITE profilePS5129420.363117IPR017930Myb domain
SMARTSM007177.6E-1167115IPR001005SANT/Myb domain
PfamPF002491.8E-1069111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.5E-2370117IPR009057Homeodomain-like
CDDcd001671.32E-771113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MGRAPCCDKN LVKKGPWAPE EDAMLRAYIH AHGTGGNWIA LPQKIGLKRC GKSCRLRWLN  60
YLRPNIKHGG FSDEEDNIIC SLYISIGSRW SVIAAQLPGR TDNDIKNYWN TKLKKKLLGR  120
RKQSDSMVSS SSSTAVDTRD GMSDATQRLS NSALERLQLH IQLQNGPLNG PTTLWPKLLH  180
PAQERMIQNL NVDYTRRQQK LPLNEPAGMH DNGLPEMETA KSGNPEFDEF KISDDRVDSA  240
MEQLVSSPSS QLQAEFDTFM RREDGNELPV WWSSDMENKS SASVSSNSWD GSNSVMGSVG  300
GNLMMFHEYG LGYNM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-22141177108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factors that activates genes required for endodermal differentiation but represses genes involved in proliferative divisions, thus regulating the transition from proliferation to differentiation in root endodermis (PubMed:26371322). Required for Casparian strip formation by positively regulating the expression of the Casparian strip genes CASP1, PER64 and ESB1 and other endodermis-specific genes, thus triggering correct localized lignin biosynthesis in root endodermis and subsequently regulating global ion homeostasis (PubMed:26124109, PubMed:26371322). {ECO:0000269|PubMed:26124109, ECO:0000269|PubMed:26371322}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Directly up-regulated by SCARECROW (SCR), as part of the differentiation program controlled by SHORT-ROOT (SHR). {ECO:0000269|PubMed:24517883, ECO:0000269|PubMed:26371322}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004296741.11e-108PREDICTED: transcription factor RAX3
SwissprotQ9FKL21e-89MYB36_ARATH; Transcription factor MYB36
TrEMBLA0A068U3621e-106A0A068U362_COFCA; Uncharacterized protein
TrEMBLA0A2P6QTP91e-106A0A2P6QTP9_ROSCH; Putative transcription factor MYB-HB-like family
STRINGXP_004296741.11e-108(Fragaria vesca)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.12e-84myb domain protein 36
Publications ? help Back to Top
  1. Fernández-Marcos M, et al.
    Control of Arabidopsis lateral root primordium boundaries by MYB36.
    New Phytol., 2017. 213(1): p. 105-112
    [PMID:27891649]