PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0173s0026.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | ERF | ||||||||
Protein Properties | Length: 396aa MW: 43807.2 Da PI: 4.6543 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 62.1 | 1.3e-19 | 127 | 176 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+G+r+++ +g+W+AeIrdp gk r++lg+f taeeAa+a++a +++++g Kalax.0173s0026.1.p 127 QYRGIRQRP-WGKWAAEIRDP---GKGVRVWLGTFNTAEEAARAYDAEARRIRG 176 69*******.**********8...545*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.61E-31 | 127 | 185 | No hit | No description |
SuperFamily | SSF54171 | 4.9E-22 | 127 | 185 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 23.723 | 127 | 184 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.0E-38 | 127 | 190 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.6E-32 | 127 | 185 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 4.2E-12 | 128 | 176 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.2E-11 | 128 | 139 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.2E-11 | 150 | 166 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 396 aa Download sequence Send to blast |
MCGGAIISDF IPTSRSHRLT AEFLWPDQQQ KRKTGGRKGS WRFDKQLEVV DAVDNDENDD 60 DDDFEADFQG FKDESDDEGE VEIVVKPFAF KAAAAAKSAS SQAPKPVKSA GFNGLAEKSA 120 KRKRKNQYRG IRQRPWGKWA AEIRDPGKGV RVWLGTFNTA EEAARAYDAE ARRIRGNKAK 180 VNFPEESTPE ARKCASRVNT HSKQLKPHEN THGSKHFGLV GVADQEYFNC LNFMEEKPLT 240 QQYGYMNSFP AADQVAPKPL SPSDAANAYF NSDQGSNSFD CSDFGWGGAR TPEITSLMSA 300 TLEGDESDFL EEANPTKKSK PDFENGMPAE ENPVEKLSEE FAAYESQMKL YQIPFDGSSW 360 NASMDSMLNG ESTQDAGNPM DLWSFDDASP MGGIF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 1e-20 | 127 | 184 | 2 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
2gcc_A | 1e-20 | 127 | 184 | 5 | 63 | ATERF1 |
3gcc_A | 1e-20 | 127 | 184 | 5 | 63 | ATERF1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB627235 | 3e-53 | AB627235.1 Malus x domestica mRNA, microsatellite: MEST074, clone: FLW01_50_B07. | |||
GenBank | GU732435 | 3e-53 | GU732435.1 Malus x domestica AP2 domain class transcription factor (AP2D11) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022715360.1 | 1e-140 | ethylene-responsive transcription factor RAP2-12-like isoform X2 | ||||
Refseq | XP_022715361.1 | 1e-140 | ethylene-responsive transcription factor RAP2-12-like isoform X2 | ||||
TrEMBL | A0A2R6PVB6 | 1e-136 | A0A2R6PVB6_ACTCH; Ethylene-responsive transcription factor RAP2-12 like | ||||
STRING | EOY27369 | 1e-137 | (Theobroma cacao) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G14230.2 | 1e-65 | related to AP2 2 |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0173s0026.1.p |