PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0172s0048.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB
Protein Properties Length: 286aa    MW: 31990.9 Da    PI: 8.0244
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0172s0048.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.11.3e-151461148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g+W++eEd ll +++ + G g W++++ + g++R++k+c++rw++yl
  Kalax.0172s0048.1.p 14 KGAWSEEEDALLRECIDKNGEGKWHLVPLKSGLNRCRKSCRLRWLNYL 61
                         79********************************************97 PP
2Myb_DNA-binding48.42.2e-1567112148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          rg+++++E +ll++++k+lG++ W++Ia +++ gR ++++k++w+++l
  Kalax.0172s0048.1.p  67 RGKFSEDEVDLLLRLHKLLGNR-WSLIAGRLP-GRKANDVKNYWNTHL 112
                          89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129424.526965IPR017930Myb domain
SuperFamilySSF466899.18E-2711108IPR009057Homeodomain-like
SMARTSM007172.2E-131363IPR001005SANT/Myb domain
PfamPF002492.3E-141461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.4E-201568IPR009057Homeodomain-like
CDDcd001677.57E-91661No hitNo description
PROSITE profilePS5129419.69966116IPR017930Myb domain
SMARTSM007172.4E-1566114IPR001005SANT/Myb domain
PfamPF002492.4E-1467112IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.9E-2369115IPR009057Homeodomain-like
CDDcd001675.54E-587112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MLAAEHDGPR GVRKGAWSEE EDALLRECID KNGEGKWHLV PLKSGLNRCR KSCRLRWLNY  60
LKPNIRRGKF SEDEVDLLLR LHKLLGNRWS LIAGRLPGRK ANDVKNYWNT HLRKKTMLRL  120
QAAAAAADCH RATTKVIRPR PRRTFSKTLL VQRMRSSQQQ QQAAPAAGLL LQHTTTTTTA  180
VSKLEGHHDN NANPDAAGEQ IQWWKSLLDD QLSDGQEVAA AALASESRSD DHVSYEIWAA  240
EDQSGERPEE TGLMTGEVAF DIELWDFLAD DEAQATSNLL QGPSS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-21141167108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1, or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021891335.18e-70transcription factor MYB75-like
SwissprotQ9FNV93e-63MY113_ARATH; Transcription factor MYB113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66380.13e-56myb domain protein 114
Publications ? help Back to Top
  1. Li T, et al.
    Jasmonic acid enhancement of anthocyanin accumulation is dependent on phytochrome A signaling pathway under far-red light in Arabidopsis.
    Biochem. Biophys. Res. Commun., 2014. 454(1): p. 78-83
    [PMID:25450360]
  2. Mondal SK,Roy S
    Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis.
    J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601
    [PMID:28490275]