PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0172s0016.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family CO-like
Protein Properties Length: 396aa    MW: 42494.9 Da    PI: 6.6586
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0172s0016.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box24.55.8e-083364435
             zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHk 35
                         + C+ +++  + lfC+ ++ +lC  C + +H 
  Kalax.0172s0016.1.p 33 KPCDVCKSASALLFCKPDSAFLCVACDTRIHA 64
                         67***************************993 PP
2zf-B_box24.55.5e-0874119241
             zf-B_box   2 eerkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41 
                          + ++C+ +e+ +++  C+ +   lC +C   +H+       H++v+
  Kalax.0172s0016.1.p  74 RLWMCEVCEQVPASVTCKADAAALCVSCDADIHSAnplsrkHDRVQ 119
                          5789*****************************6688888898876 PP
3CCT69.77.3e-24325368144
                  CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                          Rea++lRY+eKrk+R+FeK+irY+sRKa+Ae+RpR+KGrFvk++
  Kalax.0172s0016.1.p 325 REARVLRYREKRKNRRFEKTIRYASRKAYAETRPRIKGRFVKRT 368
                          9*****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.6553077IPR000315B-box-type zinc finger
SMARTSM003363.4E-123077IPR000315B-box-type zinc finger
PfamPF006433.0E-63373IPR000315B-box-type zinc finger
CDDcd000212.94E-83477No hitNo description
PROSITE profilePS501199.99773120IPR000315B-box-type zinc finger
PfamPF006431.1E-575119IPR000315B-box-type zinc finger
CDDcd000214.65E-876120No hitNo description
SMARTSM003361.1E-778120IPR000315B-box-type zinc finger
PROSITE profilePS5101716.807325367IPR010402CCT domain
PfamPF062037.9E-18325367IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 396 aa     Download sequence    Send to blast
MGILVEESCV KGYPVVGGGG GGGGLGVWPI AAKPCDVCKS ASALLFCKPD SAFLCVACDT  60
RIHAVNKLAS RHERLWMCEV CEQVPASVTC KADAAALCVS CDADIHSANP LSRKHDRVQL  120
VPFYESAESI IKKSSAASAA AASGNGTNNL VNFLVPGADE EEDQVDDVSW FLPPPKVAVA  180
AAAAMNPSEG KAAGGELFFS DFDHLLDLEN PNQVYLNFKN NQHVAGSDSV VPVQIKPETV  240
SKISSFDRCF DIDFCKSKLP FYNFDQSINH SVSSSALDIG LVPDGGSASD ISYSLGKHIK  300
SGGGEAHGVD SSSSTQATQL TGLDREARVL RYREKRKNRR FEKTIRYASR KAYAETRPRI  360
KGRFVKRTEP DLELGSLFNN GSIHFFEGYG VVPSY*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024928544.11e-130zinc finger protein CONSTANS-LIKE 5
RefseqXP_024928545.11e-130zinc finger protein CONSTANS-LIKE 5
TrEMBLF6GXA61e-125F6GXA6_VITVI; CONSTANS-like protein 5
STRINGVIT_11s0052g01800.t011e-126(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57660.11e-90CONSTANS-like 5