PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0171s0035.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family ERF
Protein Properties Length: 289aa    MW: 30658.7 Da    PI: 4.2467
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0171s0035.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.43.7e-1878128155
                  AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          s y+GVr +  +g+Wv+eIr+p++   + r++lg++ tae+Aa+a++ a+++++g
  Kalax.0171s0035.1.p  78 SVYRGVRKRA-WGKWVSEIREPRK---KSRIWLGTYPTAEMAARAHDVAALAIKG 128
                          78*****887.**********843...6**********************99887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.4E-1378128IPR001471AP2/ERF domain
CDDcd000183.89E-3178136No hitNo description
SuperFamilySSF541712.42E-2178137IPR016177DNA-binding domain
SMARTSM003808.8E-3579142IPR001471AP2/ERF domain
PROSITE profilePS5103223.6779136IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.5E-3179137IPR001471AP2/ERF domain
PRINTSPR003672.0E-108091IPR001471AP2/ERF domain
PRINTSPR003672.0E-10102118IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MELPLLSLIQ SPPPPVIQSS TSSPSSSSSS DSMASSHADQ IAVSNSAECC AAENITAAVS  60
GETETGSKRR SNADEKHSVY RGVRKRAWGK WVSEIREPRK KSRIWLGTYP TAEMAARAHD  120
VAALAIKGGS AFLNFPQLAD RLPRPATSCP KDIQAAASEA AAATFEITGD EEEGDRSLTT  180
TTTHSISSSS SSESLLELSS SMAQNDQVEN DLFDLPELVI TVGGDAFYDL PDLFNDDGMA  240
AGMTIGATGD LSSLYGSAAW QLAGADTSDA FRVEDPIHWE YNNYLIDI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-17771371273Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009771308.16e-57PREDICTED: ethylene-responsive transcription factor ERF039-like
RefseqXP_016435910.16e-57PREDICTED: ethylene-responsive transcription factor ERF039-like
SwissprotQ8LBQ77e-53ERF34_ARATH; Ethylene-responsive transcription factor ERF034
TrEMBLA0A1S3X7B81e-55A0A1S3X7B8_TOBAC; ethylene-responsive transcription factor ERF039-like
TrEMBLA0A1U7VY641e-55A0A1U7VY64_NICSY; ethylene-responsive transcription factor ERF039-like
STRINGXP_009771308.12e-56(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44940.19e-47ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]