PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0170s0058.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | MYB | ||||||||
Protein Properties | Length: 1026aa MW: 113282 Da PI: 5.0193 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 57.3 | 3.7e-18 | 39 | 85 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT+eEde+l +av+++ g++Wk+Ia+++ Rt+ qc +rwqk+l Kalax.0170s0058.1.p 39 KGQWTAEEDEILSKAVQRFKGKNWKKIAECFK-DRTDVQCLHRWQKVL 85 799****************************9.************986 PP | |||||||
2 | Myb_DNA-binding | 62.1 | 1.2e-19 | 91 | 137 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W+++Ede +v++v+q+G + W+tIa++++ gR +kqc++rw+++l Kalax.0170s0058.1.p 91 KGPWSKQEDEVIVQLVNQYGAKKWSTIAQHLP-GRIGKQCRERWHNHL 137 79******************************.*************97 PP | |||||||
3 | Myb_DNA-binding | 45.9 | 1.3e-14 | 143 | 185 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 r +WT+ E++ l++a++ +G++ W+ + ++ gRt++ +k++w+ Kalax.0170s0058.1.p 143 REAWTQKEELALIQAHQIYGNK-WAELTKFLP-GRTDNAIKNHWN 185 789*******************.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 17.175 | 34 | 85 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 7.18E-18 | 37 | 99 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.4E-15 | 38 | 87 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.9E-15 | 39 | 85 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.0E-21 | 40 | 93 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.42E-13 | 42 | 85 | No hit | No description |
PROSITE profile | PS51294 | 31.093 | 86 | 141 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.5E-30 | 88 | 184 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.4E-18 | 90 | 139 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.5E-17 | 91 | 137 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.75E-15 | 93 | 137 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.4E-26 | 94 | 140 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.5E-20 | 141 | 192 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 18.438 | 142 | 192 | IPR017930 | Myb domain |
SMART | SM00717 | 5.9E-14 | 142 | 190 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.0E-12 | 143 | 186 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.11E-10 | 145 | 185 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003713 | Molecular Function | transcription coactivator activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 1026 aa Download sequence Send to blast |
MDSNHRTMNH ASQNGADDRR LKVRPPHGRT TGPTRRSTKG QWTAEEDEIL SKAVQRFKGK 60 NWKKIAECFK DRTDVQCLHR WQKVLNPELI KGPWSKQEDE VIVQLVNQYG AKKWSTIAQH 120 LPGRIGKQCR ERWHNHLNPA INREAWTQKE ELALIQAHQI YGNKWAELTK FLPGRTDNAI 180 KNHWNSSVKK KMESYIASGL LSQLQGLPLD GQNLSMSSPA SRMQQSSGDE SNLKEGNDVE 240 DISECSQGST APGCSLNASD MNNRILHSRS EFMHTNCSGQ MKQERCSPQS SEAYFASIEE 300 VNMSIPEIVV NCSLLDRNSS LTSGGLLADD DYNLQEFPGM SLQELGQDQP YGLTANGSNE 360 MLHLPYYNSS LVTASISSGN TVIEPEKTEK FLVSESTSCL PISIPSNAGA DGCGACHSLS 420 FSNTVEMDGC EDSLILQASN LQIQDSMGTS ASHSTYMRSE VEENSCFQAP SSGPPYFNFH 480 DNKLSYGCGP SQVDHFPPGT QEQDLAGSPC NEFMLTEDFM EPVCNGGTES TVLHGHLNNQ 540 QYTDHLPDEP IERLDECTHI IDELPTAKIE GREQDNGSLF YEPPRFPSLD VPFFSCDLVQ 600 SSNDLQQEYS PLGIRQLMMS SVNCLTPFRL WDSPTRENSP DALLKSAAKT FSGTPSILKK 660 RHRDLLSPLS DRRKDKRLDS DSKQKSFSSL ARDFSNLDAM FEETATCSTA TQKRDSGEFS 720 DDKENVDPAV MRQKEVERGG SGSEKDSSLC RTEENKSSNY GLDQESQHDA GADGHVRKSS 780 ENLADNDLEN ILIFSPDQVG LEADKVFVSS AWANPPSSGS RHTPSINSPS VNRSRSHVTG 840 SSSKCMTPSC LEIAVSNAGL EMGIENGNMF GGTPFKISFE SPSAWKSPWF MNSFLPGPRV 900 DTDITIEDIG YFLSPGERSC YALGLMEQLS ERSAAAIAEA HEMLGNETPK AILRETHSKS 960 ANAGHPDTSD NQPGSLSRFA PDMLPERQVL DFSECETPNK EKEVRRGSPS VKLLSPSSYL 1020 VKGCR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h88_C | 5e-67 | 39 | 192 | 6 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 5e-67 | 39 | 192 | 6 | 159 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 670 | 677 | DRRKDKRL |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00466 | DAP | Transfer from AT4G32730 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021618556.1 | 0.0 | transcription factor MYB3R-1 | ||||
TrEMBL | A0A2C9VK70 | 0.0 | A0A2C9VK70_MANES; Uncharacterized protein | ||||
STRING | EOY29679 | 0.0 | (Theobroma cacao) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G32730.2 | 0.0 | Homeodomain-like protein |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0170s0058.1.p |