PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0168s0015.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | WRKY | ||||||||
Protein Properties | Length: 325aa MW: 35450.6 Da PI: 8.023 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 105 | 4e-33 | 171 | 228 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +Dgy+WrKYGqK vk+s++prsYYrCt+++C vkk+vers +dp++v++tYeg+Hnh+ Kalax.0168s0015.2.p 171 EDGYRWRKYGQKAVKNSPYPRSYYRCTTQKCVVKKRVERSFQDPSTVITTYEGQHNHH 228 8********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 2.4E-34 | 155 | 230 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 3.14E-29 | 162 | 230 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 32.133 | 165 | 230 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.3E-38 | 170 | 229 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.4E-25 | 171 | 228 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 325 aa Download sequence Send to blast |
MSQPNRNPYD PYPYDPFFSS LEANPNASFF SSPQEDPNSY NSNLTGHCNS YITSFNDFVH 60 GGGSVVSSSS MSTVDYVYSN NNGVAVAVAG DHSCNGSNKL PMRHSLSVSS SSAEVVGEEY 120 SGKSMVDDID HHNGDDDQSK KVNDKQKKKG AKRAKEPRFA FVTKSEIDQL EDGYRWRKYG 180 QKAVKNSPYP RSYYRCTTQK CVVKKRVERS FQDPSTVITT YEGQHNHHSP ATLRGNAAAM 240 LSANAALFGG SSSSLSPGAL SSFPHHPLFT TFNNGLNAAP PLYNYNSYQN PSNNTSSSHS 300 IVPNFGSLQD LLDHPSSGKR ESNP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 7e-29 | 163 | 231 | 10 | 78 | Probable WRKY transcription factor 4 |
2lex_A | 7e-29 | 163 | 231 | 10 | 78 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Swissprot | Q8VWJ2 | 9e-49 | WRK28_ARATH; WRKY transcription factor 28 | ||||
TrEMBL | A0A2P5D830 | 8e-61 | A0A2P5D830_PARAD; WRKY domain containing protein | ||||
STRING | Gorai.009G157300.1 | 1e-59 | (Gossypium raimondii) | ||||
STRING | XP_008447132.1 | 1e-59 | (Cucumis melo) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G29860.1 | 2e-45 | WRKY DNA-binding protein 71 |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0168s0015.2.p |
Publications ? help Back to Top | |||
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