PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0167s0009.2.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

NF-YC

Protein Properties

Length: 267aa MW: 29161.3 Da PI: 4.8022

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0167s0009.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	50.7	3.8e-16	6	80	24	98
NF-YC 24 arikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 arikki++adedv +i+ +Pvl+ska elf+ +l ++ + ++ +t+ ++ +v+r ifdfl ++v + Kalax.0167s0009.2.p 6 ARIKKIMQADEDVGKIALAVPVLVSKALELFLQDLCDMTYGITVQTGAKTVSSLHLKHCVQRYSIFDFLKEVVNK 80 8*********************************************************************99976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00808	1.0E-16	5	65	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
Gene3D	G3DSA:1.10.20.10	4.9E-22	6	79	IPR009072	Histone-fold
SuperFamily	SSF47113	2.29E-18	12	82	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 267 aa Download sequence Send to blast
MIVFQARIKK IMQADEDVGK IALAVPVLVS KALELFLQDL CDMTYGITVQ TGAKTVSSLH 60 LKHCVQRYSI FDFLKEVVNK VPDYTHSGTS GEVQTISRRR KGAGDELSDS DEYSKRSRLQ 120 EAVPGVGGGR GRSRGRGRGR GRGRVGHVAE PDDTQNDFEP ESSAVNLDAI QANNNNKGRE 180 LPSDFKGDGD GLTNPVVGKF DLNTEIKEKE STPYLATDDK VSAHSAIQSE NAELGISEMD 240 RMNFNPLQLG SMKSTFDDDE DYDEDG*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1jfi_A	1e-16	6	66	15	75	Transcription Regulator NC2 alpha chain
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	133	142	RGRGRGRGRG
2	133	143	RGRGRGRGRGR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006471322.1	5e-65	dr1-associated corepressor isoform X1
TrEMBL	A0A2H5PSH3	2e-63	A0A2H5PSH3_CITUN; Uncharacterized protein
TrEMBL	V4SXS0	2e-63	V4SXS0_9ROSI; Uncharacterized protein
STRING	XP_006471322.1	2e-64	(Citrus sinensis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12480.1	7e-55	nuclear factor Y, subunit C11

Link Out ? help Back to Top
Phytozome	Kalax.0167s0009.2.p