PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0167s0009.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | NF-YC | ||||||||
Protein Properties | Length: 273aa MW: 29887.2 Da PI: 5.1225 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 56.7 | 5.3e-18 | 6 | 86 | 18 | 98 |
NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 ++++P arikki++adedv +i+ +Pvl+ska elf+ +l ++ + ++ +t+ ++ +v+r ifdfl ++v + Kalax.0167s0009.1.p 6 DTRFPAARIKKIMQADEDVGKIALAVPVLVSKALELFLQDLCDMTYGITVQTGAKTVSSLHLKHCVQRYSIFDFLKEVVNK 86 5789************************************************************************99976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 3.9E-24 | 3 | 72 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 3.05E-19 | 4 | 90 | IPR009072 | Histone-fold |
Pfam | PF00808 | 7.1E-19 | 8 | 71 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 273 aa Download sequence Send to blast |
MRKKLDTRFP AARIKKIMQA DEDVGKIALA VPVLVSKALE LFLQDLCDMT YGITVQTGAK 60 TVSSLHLKHC VQRYSIFDFL KEVVNKVPDY THSGTSGEVQ TISRRRKGAG DELSDSDEYS 120 KRSRLQEAVP GVGGGRGRSR GRGRGRGRGR VGHVAEPDDT QNDFEPESSA VNLDAIQANN 180 NNKGRELPSD FKGDGDGLTN PVVGKFDLNT EIKEKESTPY LATDDKVSAH SAIQSENAEL 240 GISEMDRMNF NPLQLGSMKS TFDDDEDYDE DG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1jfi_A | 6e-21 | 2 | 72 | 5 | 75 | Transcription Regulator NC2 alpha chain |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 139 | 148 | RGRGRGRGRG |
2 | 139 | 149 | RGRGRGRGRGR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006471322.1 | 4e-74 | dr1-associated corepressor isoform X1 | ||||
TrEMBL | V4SXS0 | 2e-72 | V4SXS0_9ROSI; Uncharacterized protein | ||||
STRING | XP_006471322.1 | 2e-73 | (Citrus sinensis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12480.1 | 5e-64 | nuclear factor Y, subunit C11 |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0167s0009.1.p |