PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0166s0012.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family GRAS
Protein Properties Length: 537aa    MW: 59562.7 Da    PI: 7.9184
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0166s0012.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS424.11.2e-1291655361374
                 GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPi 90 
                          l++ L++cA a+s+++  +aq l+a+l++++s +g+p+qRl ay++e+L a+ ++ +s++yk l+++e +   ss+ ++++++++ev+P+
  Kalax.0166s0012.1.p 165 LRQGLVDCALAISEDNRPKAQYLIAELEQMVSVSGEPIQRLGAYVLEGLIAKFNSAGSSIYKVLKCKEPA---SSDLFSYMHILYEVCPY 251
                          5788*****************************************************************9...99*************** PP

                 GRAS  91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg...skeeleetgerLakfAeelgvpfe 177
                          +kf+++ aN aI ea++ e+rvHiiDf i+qG QW++L++a+a+Rp+gpp++RiT ++++ s          ++g+rL+k+A++++vpfe
  Kalax.0166s0012.1.p 252 FKFGYMSANGAIAEAMKDEDRVHIIDFRIGQGSQWLTLIRAFAARPGGPPHIRITSIEDSMSAyarGGGGQGAVGKRLSKLAQSFKVPFE 341
                          ***********************************************************88878877788899***************** PP

                 GRAS 178 fnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysal 267
                          f+   + +  + +  +L ++pgEalaVn+++ lh+l+desvs++++rd++L+lvk+lsPkvv++veqe+++n++ F+ rfle+++yy+a+
  Kalax.0166s0012.1.p 342 FHSA-SMSDCQSQQVNLGIRPGEALAVNFAFILHHLPDESVSTHNHRDRLLRLVKGLSPKVVTLVEQESNTNTAAFFPRFLETMSYYTAM 430
                          **95.444444456689************************************************************************* PP

                 GRAS 268 fdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgs 357
                          f+s++a+lpr++++ri vE+++l++++vn++acegaer++rhe l+kW++r+ +aGFkp+pls+ +++++k+ll+k++++ y++ee++g+
  Kalax.0166s0012.1.p 431 FESIDATLPRNHKDRIHVEQHCLAKDVVNIIACEGAERVKRHELLGKWKSRFAMAGFKPYPLSSLVNATIKALLEKYSDK-YKLEERDGA 519
                          ******************************************************************************55.********* PP

                 GRAS 358 lvlgWkdrpLvsvSaWr 374
                          l+lgW++r+Lv  +aW+
  Kalax.0166s0012.1.p 520 LYLGWMNRALVGSCAWT 536
                          ****************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098565.379139517IPR005202Transcription factor GRAS
PfamPF035144.1E-127165536IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 537 aa     Download sequence    Send to blast
MSKRSYRKSM PEGHTYLVPQ LHQLDHQLYC NDSNPSARFT IQNPNGGGRV LIPATYARYC  60
TLESSSTTRS SNNASSVSFS DGSPLSQQDC SSYQLDQHQV LEKSYGSPIS GSCLTDDKHE  120
LRNKLMELET VMLGPDSDVI DRSGVASPGI DSWRQMMGIA SKQDLRQGLV DCALAISEDN  180
RPKAQYLIAE LEQMVSVSGE PIQRLGAYVL EGLIAKFNSA GSSIYKVLKC KEPASSDLFS  240
YMHILYEVCP YFKFGYMSAN GAIAEAMKDE DRVHIIDFRI GQGSQWLTLI RAFAARPGGP  300
PHIRITSIED SMSAYARGGG GQGAVGKRLS KLAQSFKVPF EFHSASMSDC QSQQVNLGIR  360
PGEALAVNFA FILHHLPDES VSTHNHRDRL LRLVKGLSPK VVTLVEQESN TNTAAFFPRF  420
LETMSYYTAM FESIDATLPR NHKDRIHVEQ HCLAKDVVNI IACEGAERVK RHELLGKWKS  480
RFAMAGFKPY PLSSLVNATI KALLEKYSDK YKLEERDGAL YLGWMNRALV GSCAWT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-5917253626379Protein SCARECROW
5b3h_A2e-5917253625378Protein SCARECROW
5b3h_D2e-5917253625378Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in phytochrome A (phyA) signal transduction. {ECO:0000269|PubMed:10817761}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021675700.10.0scarecrow-like transcription factor PAT1
RefseqXP_021675701.10.0scarecrow-like transcription factor PAT1
RefseqXP_021675702.10.0scarecrow-like transcription factor PAT1
SwissprotQ9LDL70.0PAT1_ARATH; Scarecrow-like transcription factor PAT1
TrEMBLA0A438DQ250.0A0A438DQ25_VITVI; Scarecrow-like transcription factor PAT1
STRINGPOPTR_0014s16230.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.20.0GRAS family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Heyman J, et al.
    The heterodimeric transcription factor complex ERF115-PAT1 grants regeneration competence.
    Nat Plants, 2016. 2(11): p. 16165
    [PMID:27797356]