PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0165s0062.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | DBB | ||||||||
Protein Properties | Length: 250aa MW: 27773.5 Da PI: 6.4972 | ||||||||
Description | DBB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 24.5 | 5.5e-08 | 50 | 90 | 4 | 38 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg.......Ht 38 +C+ ++++ + fC ++ lCe C H g H+ Kalax.0165s0062.1.p 50 IRCDVCNREDAAVFCSADEAALCEGCDRRVH-GankvaqkHE 90 68**************************999.4456666665 PP | |||||||
2 | zf-B_box | 26.4 | 1.5e-08 | 103 | 134 | 3 | 34 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeH 34 ++ C+ ++e ++ lfC++++ lC++C +H Kalax.0165s0062.1.p 103 APLCDICQERRALLFCQQDRAILCRECDYPIH 134 689************************99988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 10.722 | 47 | 94 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 4.7E-10 | 47 | 94 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 8.06E-5 | 50 | 94 | No hit | No description |
Pfam | PF00643 | 4.0E-6 | 50 | 91 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 9.812 | 101 | 148 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 3.9E-11 | 101 | 148 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 4.7E-7 | 103 | 143 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.41E-8 | 104 | 148 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 250 aa Download sequence Send to blast |
MTSVMVMLLT SSLAASSHLQ LPISSLFIGL PIEFQIFVGL ESTRIREMKI RCDVCNREDA 60 AVFCSADEAA LCEGCDRRVH GANKVAQKHE RFSLVRPSSA ADAPLCDICQ ERRALLFCQQ 120 DRAILCRECD YPIHMASEQT QKHSRFLLTG VKLTPLSSSP EDQISCERER EQSVSVSAEA 180 RVASCAKKRR HVDLRVESQA TSFVEHGSGA SRPASASSSI SEYLETLPGW HVEDFFDHLH 240 NPYYGFYNA* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that acts as positive regulator of seedling photomorphogenesis (PubMed:17965270). Acts downstream of COP1 and play an important role in early and long-term adjustment of the shade avoidance syndrome (SAS) responses in natural environments (PubMed:21070414). {ECO:0000269|PubMed:17965270, ECO:0000269|PubMed:21070414}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004291815.1 | 6e-66 | PREDICTED: B-box zinc finger protein 21 | ||||
Refseq | XP_024030098.1 | 3e-66 | B-box zinc finger protein 20 isoform X2 | ||||
Swissprot | Q9LQZ7 | 1e-62 | BBX21_ARATH; B-box zinc finger protein 21 | ||||
TrEMBL | A0A2P6PZ03 | 2e-64 | A0A2P6PZ03_ROSCH; Putative transcription factor interactor and regulator Znf-B family | ||||
STRING | XP_004291815.1 | 2e-65 | (Fragaria vesca) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75540.1 | 1e-58 | salt tolerance homolog2 |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0165s0062.1.p |