PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0162s0076.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family HSF
Protein Properties Length: 419aa    MW: 47289.1 Da    PI: 9.3186
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0162s0076.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind102.73.2e-321061982103
                          HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXX CS
         HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkk 91 
                          F++k+++++ d++++ li w + +nsf+v+d+ ef+++vLp yFkh+nf+SFvRQLn+YgF+kv+ ++         weF++++F +g+ 
  Kalax.0162s0076.1.p 106 FVMKTFRMVCDPATDALICWGRGSNSFLVFDPLEFSHRVLPVYFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEWFLRGQV 186
                          9****************************************************************999.........************* PP

                          XXXXXXXXXXXX CS
         HSF_DNA-bind  92 ellekikrkkse 103
                          +ll++i r+k++
  Kalax.0162s0076.1.p 187 HLLRNIVRRKHS 198
                          ********9976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004152.6E-49102195IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467852.86E-33103195IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.105.5E-35103195IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004472.4E-28106195IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.7E-16106129IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.7E-16144156IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS004340145169IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.7E-16157169IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006970Biological Processresponse to osmotic stress
GO:0009737Biological Processresponse to abscisic acid
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 419 aa     Download sequence    Send to blast
MIRPIISYET RTIPSRWIEK SPPPPKNIKR KPTGTTRLRI FNLTRPHADT LHSSTVHLPS  60
QYINSVKTQP GIAPPRPDQR SRTTREQLAE RMDQAVMDGS DTIAPFVMKT FRMVCDPATD  120
ALICWGRGSN SFLVFDPLEF SHRVLPVYFK HNNFSSFVRQ LNTYGFRKVD PDRWEFANEW  180
FLRGQVHLLR NIVRRKHSRA SSSASRVVEE MCGDEDQDIL VEISKLKEEQ RSIEMEIQDM  240
SRRLDATERR PQQMMAFLHR AVEDPEIVPR MMLEKDKHQQ QHSQQRRQVI SDSPDKKRRL  300
LFNATSSSSS SSMATTIKTE DEDDANLTTG SSPDQPGWCQ SPELSSSSAW FNNPLGSIHP  360
AARAGGSGTR SAPGSAAYGG DKSNSDRYGG AFGYIQDDAD LGANPTPPYP FSLFRGGF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A2e-269719511120Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00379DAPTransfer from AT3G24520Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024181902.11e-105heat stress transcription factor C-1-like
SwissprotQ9LV523e-83HSFC1_ARATH; Heat stress transcription factor C-1
TrEMBLA0A2P6RJF41e-103A0A2P6RJF4_ROSCH; Putative transcription factor HSF-type-DNA-binding family
STRINGXP_004287427.11e-102(Fragaria vesca)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24520.13e-78heat shock transcription factor C1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Guan Q,Yue X,Zeng H,Zhu J
    The protein phosphatase RCF2 and its interacting partner NAC019 are critical for heat stress-responsive gene regulation and thermotolerance in Arabidopsis.
    Plant Cell, 2014. 26(1): p. 438-53
    [PMID:24415771]