PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0161s0052.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | WRKY | ||||||||
Protein Properties | Length: 448aa MW: 49254 Da PI: 6.6572 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 90.2 | 1.7e-28 | 47 | 103 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 Dgy+WrKYGqK+vkg++f rsYYrCt+++C+vkk+vers+ +++++++ g+H+h+ Kalax.0161s0052.1.p 47 ADGYSWRKYGQKHVKGNKFVRSYYRCTHPDCQVKKQVERSH-NGQITDTLVFGDHDHP 103 6****************************************.***************8 PP | |||||||
2 | WRKY | 105.1 | 3.6e-33 | 221 | 279 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ++Dgy+WrKYGqK vkg+++prsYYrC++agCpvkk+ver+++d kvv++tYeg+H+h+ Kalax.0161s0052.1.p 221 VNDGYRWRKYGQKFVKGNPNPRSYYRCSTAGCPVKKHVERASHDAKVVITTYEGQHDHD 279 58********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 2.0E-24 | 44 | 104 | IPR003657 | WRKY domain |
SMART | SM00774 | 6.8E-30 | 46 | 104 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.09E-22 | 46 | 104 | IPR003657 | WRKY domain |
Pfam | PF03106 | 3.8E-22 | 48 | 103 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 19.416 | 48 | 105 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 1.9E-35 | 208 | 281 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.35E-29 | 213 | 281 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 35.886 | 216 | 281 | IPR003657 | WRKY domain |
SMART | SM00774 | 3.6E-38 | 221 | 280 | IPR003657 | WRKY domain |
Pfam | PF03106 | 3.0E-26 | 222 | 278 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009863 | Biological Process | salicylic acid mediated signaling pathway | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 448 aa Download sequence Send to blast |
MVATEESMRG EIVSKLEKSN SPESGILVLR SDQEGGMPLV TPEKGPADGY SWRKYGQKHV 60 KGNKFVRSYY RCTHPDCQVK KQVERSHNGQ ITDTLVFGDH DHPRTQLRLP VTVNSTIVAK 120 EGVIDMPCPV LSEEKTPVAV HQAPKPTDHK ETPMPPTVAE PDLQEHVVAQ STKTKDNLGK 180 DCTPDLKRQK KEPLHPEAAI TDKPTMDPRL VLQTVSEVDM VNDGYRWRKY GQKFVKGNPN 240 PRSYYRCSTA GCPVKKHVER ASHDAKVVIT TYEGQHDHDM PPARMMSNST SGNSTNQFLG 300 LEYNPGVRSN ESHHKCKPKD QLNREPKIES EEAEKVVNQL GSLSSSGPES KMSDQISGKS 360 ADNLEAVESC GVTDVAVSTN PAEGFNTDGQ EVTKARASPG LAADGLKAEE DSELRNDEAI 420 KQETSEGVRR NLDHGSPTAA TLRDPHL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 3e-36 | 48 | 283 | 2 | 76 | WRKY transcription factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Binds to a 5'-CGTTGACCGAG-3' consensus core sequence which contains a W box, a frequently occurring elicitor-responsive cis-acting element. {ECO:0000269|PubMed:8972846}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00094 | SELEX | Transfer from AT2G04880 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid (SA). {ECO:0000269|PubMed:17264121}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015869324.1 | 1e-107 | WRKY transcription factor 1-like | ||||
Refseq | XP_015881045.1 | 1e-107 | WRKY transcription factor 1 | ||||
Swissprot | Q9SI37 | 2e-75 | WRKY1_ARATH; WRKY transcription factor 1 | ||||
TrEMBL | F6HHL8 | 1e-104 | F6HHL8_VITVI; Uncharacterized protein | ||||
STRING | VIT_12s0057g00550.t01 | 1e-104 | (Vitis vinifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G04880.2 | 1e-79 | zinc-dependent activator protein-1 |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0161s0052.1.p |
Publications ? help Back to Top | |||
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