PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0160s0045.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family ERF
Protein Properties Length: 249aa    MW: 27370.8 Da    PI: 8.5892
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0160s0045.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.51.8e-19142191255
                  AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                           y+GVr+++ +g+W+AeIrdp+    r +r++lg+f tae Aa+a+++a+ +++g
  Kalax.0160s0045.1.p 142 NYRGVRQRP-WGKWAAEIRDPR----RaARVWLGTFETAEAAARAYDRAAIEFRG 191
                          59*******.**********82....48************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.43E-21141199No hitNo description
PfamPF008471.1E-13142191IPR001471AP2/ERF domain
SMARTSM003803.1E-39142205IPR001471AP2/ERF domain
PROSITE profilePS5103225.501142199IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.2E-32142200IPR001471AP2/ERF domain
SuperFamilySSF541711.7E-22142200IPR016177DNA-binding domain
PRINTSPR003676.4E-12143154IPR001471AP2/ERF domain
PRINTSPR003676.4E-12165181IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MQAGQELTFL NRKCLILQTN PFIMKKFDID PIMESFITNT SSSISKEEEF SAMVSALKHV  60
ISGDTPPNPQ PSSSFTSSED SHIISLPDIG ACGRCNFDGC LGCDYFPAEK QSHSAVISGG  120
ASEKKRSNGD VGRKRKHRVK KNYRGVRQRP WGKWAAEIRD PRRAARVWLG TFETAEAAAR  180
AYDRAAIEFR GNRAKLNFPM TDYNSASMVA GCDGNLIKTE EASSNKKVEE ENADKGSTEM  240
EASGSLMR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-25141200161ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010026297.17e-57PREDICTED: ethylene-responsive transcription factor ERF109
SwissprotQ9SZ062e-37EF109_ARATH; Ethylene-responsive transcription factor ERF109
TrEMBLA0A059AYI42e-55A0A059AYI4_EUCGR; Uncharacterized protein
STRINGXP_010026297.13e-56(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34410.11e-37redox responsive transcription factor 1
Publications ? help Back to Top
  1. Matsuo M,Oelmüller R
    REDOX RESPONSIVE TRANSCRIPTION FACTOR1 is involved in age-dependent and systemic stress signaling.
    Plant Signal Behav, 2015. 10(11): p. e1051279
    [PMID:26479402]
  2. Bertea CM,Narayana R,Agliassa C,Rodgers CT,Maffei ME
    Geomagnetic Field (Gmf) and Plant Evolution: Investigating the Effects of Gmf Reversal on Arabidopsis thaliana Development and Gene Expression.
    J Vis Exp, 2018.
    [PMID:26649488]
  3. Bahieldin A, et al.
    Ethylene responsive transcription factor ERF109 retards PCD and improves salt tolerance in plant.
    BMC Plant Biol., 2016. 16(1): p. 216
    [PMID:27716054]
  4. Huang D,Lin W,Deng B,Ren Y,Miao Y
    Dual-Located WHIRLY1 Interacting with LHCA1 Alters Photochemical Activities of Photosystem I and Is Involved in Light Adaptation in Arabidopsis.
    Int J Mol Sci, 2018.
    [PMID:29112140]
  5. Kong X, et al.
    PHB3 Maintains Root Stem Cell Niche Identity through ROS-Responsive AP2/ERF Transcription Factors in Arabidopsis.
    Cell Rep, 2018. 22(5): p. 1350-1363
    [PMID:29386120]