PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0160s0008.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | MYB | ||||||||
Protein Properties | Length: 378aa MW: 41593.2 Da PI: 7.2448 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 51.9 | 1.7e-16 | 14 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd +l+d++++ G+g +W + ++++g++R++k+c++rw++yl Kalax.0160s0008.1.p 14 KGPWSPEEDSKLKDYIEKNGTGgNWIALPQKVGLRRCGKSCRLRWLNYL 62 79*********************************************97 PP | |||||||
2 | Myb_DNA-binding | 37.5 | 5.6e-12 | 69 | 111 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g +++eEd + + + G++ W+ Ia+ ++ gRt++++k++w++ Kalax.0160s0008.1.p 69 GDFSEEEDRVICSLYATIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111 689******************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.717 | 9 | 62 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.72E-27 | 11 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.0E-12 | 13 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.1E-15 | 14 | 62 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.7E-23 | 15 | 69 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.78E-9 | 16 | 62 | No hit | No description |
PROSITE profile | PS51294 | 22.338 | 63 | 117 | IPR017930 | Myb domain |
SMART | SM00717 | 1.3E-11 | 67 | 115 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.7E-11 | 69 | 111 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.4E-23 | 70 | 117 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 9.95E-8 | 71 | 110 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 378 aa Download sequence Send to blast |
MGRAPCCDKA NVKKGPWSPE EDSKLKDYIE KNGTGGNWIA LPQKVGLRRC GKSCRLRWLN 60 YLRPNIKHGD FSEEEDRVIC SLYATIGSRW SIIAAQLPGR TDNDIKNYWN TKLKKKLLAF 120 AAAASSSSTT AAFNAAAAAS SAFHHRSSAA NKPLPPSMYS STSSSSHMTS LYNNYNYTPN 180 PNNPKQPLMV DDNHQQQPLL SATATSSCLE TGVSQQQYYQ PLIMFGGTGS DLQQTSCSSN 240 NSENNGGGIS CGNKQADMGI MSYHNFNNNS SIRSNIIPAG FDEINDSNVF LSHQFDDHHS 300 TIINSSTDDD APPAPALMAD FYLDVVKQQQ QQLSMNMNDL SLINIGGGNQ QVINSKITSQ 360 EKDHQRMMMY YFNTDYC* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-27 | 14 | 117 | 7 | 108 | B-MYB |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011012695.1 | 4e-83 | PREDICTED: transcription factor RAX2-like | ||||
TrEMBL | A0A3Q7HYM4 | 5e-81 | A0A3Q7HYM4_SOLLC; Uncharacterized protein | ||||
STRING | XP_006488026.1 | 3e-81 | (Citrus sinensis) | ||||
STRING | Solyc09g008250.2.1 | 7e-82 | (Solanum lycopersicum) | ||||
STRING | XP_006424474.1 | 3e-81 | (Citrus clementina) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G65790.1 | 2e-79 | myb domain protein 68 |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0160s0008.1.p |